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Group: GeneGo - with tag systems_biology [45 articles]

Articles récents ajouter au groupe GeneGo with tag systems_biology
  • Systems biology for cancer.
    Curr Opin Oncol, Vol. 17, No. 1. (January 2005), pp. 44-48.
    by IG Khalil, C Hill
    posted to systems_biology network by shikin to the group GeneGo on 2008-05-19 18:11:38 as ** along with 1 person wnpx
  • Computational systems biology.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210.
    by H Kitano
    posted to systems_biology by shikin to the group GeneGo on 2008-05-19 17:14:50 as ***** along with 14 people and 4 groups irenas rhem1224 lyongu eweaver wnpx ddahlem shivakumar3_14 os252 dgront mmt livingthingdan agileproteomics grahamc maburkitt dbk-lab TCR_Signaling SysbioMPI-TCells livingthing
  • Systems biology and new technologies enable predictive and preventative medicine.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 640-643.
    by L Hood, JR Heath, ME Phelps, B Lin
    posted to systems_biology hood by shikin to the group GeneGo on 2008-05-04 13:34:48 as ** along with 6 people megraw raiyar AlexanderPico wnpx cconboy maburkitt
  • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae.
    Molecular & cellular proteomics : MCP, Vol. 1, No. 4. (April 2002), pp. 323-333.
    by TJ Griffin, SP Gygi, T Ideker, B Rist, J Eng, L Hood, R Aebersold
    posted to systems_biology by shikin to the group GeneGo on 2008-05-04 13:30:30 as **
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to systems_biology hood by shikin to the group GeneGo on 2008-05-04 13:29:16 as ***** along with 10 people and 2 groups thomaskelder snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek raiyar Bioinformatics steinmetzlab
  • Global properties of biological networks.
    Drug discovery today, Vol. 10, No. 5. (1 March 2005), pp. 365-372.
    by MG Grigorov
    posted to systems_biology network by shikin to the group GeneGo on 2008-05-04 13:22:48 as ****
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
    posted to systems_biology metabolomics by shikin to the group GeneGo on 2008-05-04 13:20:34 as ** along with 9 people and 1 group gemmalholliday alanrw irenas nicklynch alexg dullhunk mhucka raiyar fishtank steinmetzlab
  • A novel method for visualizing nuclear hormone receptor networks relevant to drug metabolism.
    Drug metabolism and disposition: the biological fate of chemicals, Vol. 33, No. 3. (March 2005), pp. 474-481.
    by S Ekins, E Kirillov, EA Rakhmatulin, T Nikolskaya
    posted to toxicology systems_biology network genego by shikin to the group GeneGo on 2008-05-04 13:19:07 as **
  • Pathway mapping tools for analysis of high content data.
    Methods in molecular biology (Clifton, N.J.), Vol. 356 (2007), pp. 319-350.
    by S Ekins, Y Nikolsky, A Bugrim, E Kirillov, T Nikolskaya
    posted to systems_biology pathway-analysis genego_articles by shikin to the group GeneGo on 2008-05-04 13:09:52 as ** along with 2 people AlexanderPico thomaskelder
  • Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms
    Xenobiotica, Vol. 36, No. 10-11. (8220), pp. 877-901.
    by Ekins, , Bugrim, , Brovold, , Kirillov, , Nikolsky, , Rakhmatulin, , Sorokina, , Ryabov, , Serebryiskaya, , Melnikov, , Metz, , Nikolskaya,
    posted to toxicology systems_biology network method genego_articles by shikin to the group GeneGo on 2008-05-04 13:08:06 as **
  • Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis
    Genome Biology, Vol. 8, No. 9. (2007)
    by Robert Kleemann, Lars Verschuren, Marjan van Erk, Yuri Nikolsky, Nicole Cnubben, Elwin Verheij, Age Smilde, Henk Hendriks, Susanne Zadelaar, Graham Smith, Valery Kaznacheev, Tatiana Nikolskaya, Anton Melnikov, Eva H Camejo, Jan van der Greef, Ben van Ommen, Teake Kooistra
    posted to systems_biology genego_articles by shikin to the group GeneGo on 2008-05-04 13:04:56 as ** along with 2 people aconesa vinithepooh
  • Modelling microtubule patterns
    Nature Cell Biology, Vol. 8, No. 11., pp. 1204-1211.
    by Eric Karsenti, François Nédélec, Thomas Surrey
    posted to systems_biology nature_sysbio_08 by shikin to the group GeneGo on 2008-05-04 12:30:25 as *** along with 4 people and 1 group rubendrr rahulthadani qwermish softsimu cytoskeleton-and-afm
  • Data-driven modelling of signal-transduction networks
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11., pp. 820-828.
    by Kevin A Janes, Michael B Yaffe
    posted to systems_biology nature_sysbio_08 by shikin to the group GeneGo on 2008-05-04 12:29:57 as *** along with 4 people and 1 group jyuh cdppublications winterschlaefer cdpwebadmin CDP
  • Physicochemical modelling of cell signalling pathways
    Nature Cell Biology, Vol. 8, No. 11., pp. 1195-1203.
    by Bree B Aldridge, John M Burke, Douglas A Lauffenburger, Peter K Sorger
    posted to systems_biology nature_sysbio_08 by shikin to the group GeneGo on 2008-05-04 12:29:26 as *** along with 5 people and 4 groups mattjb mhucka jaycopeland cdppublications burkey ComplexAdaptiveSystems DSTO-CAS SorgerLab CDP
  • Linking data to models: data regression
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11. (27 September 2006), pp. 813-819.
    by Khuloud Jaqaman, Gaudenz Danuser
    posted to systems_biology nature_sysbio_08 by shikin to the group GeneGo on 2008-05-04 12:29:10 as *** along with 5 people and 2 groups jxl nickluscombe glyg rahulthadani cdpwebadmin EC EBI-regulation
  • Collecting and organizing systematic sets of protein data
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11., pp. 803-812.
    by John G Albeck, Gavin Macbeath, Forest M White, Peter K Sorger, Douglas A Lauffenburger, Suzanne Gaudet
    posted to systems_biology nature_sysbio_08 by shikin to the group GeneGo on 2008-05-04 12:28:47 as *** along with 5 people and 2 groups balajis massivemayhem jaycopeland cdppublications cdpwebadmin SorgerLab CDP
  • Modelling data across labs, genomes, space and time
    Nature Cell Biology, Vol. 8, No. 11., pp. 1190-1194.
    by Jason R Swedlow, Suzanna E Lewis, Ilya G Goldberg
    posted to systems_biology nature_sysbio_08 by shikin to the group GeneGo on 2008-05-04 12:28:28 as *** along with 4 people jfr glyg MrData scienbox
  • Linking publication, gene and protein data
    Nat Cell Biol, Vol. 8, No. 11. (November 2006), pp. 1183-1189.
    by Paul Kersey, Rolf Apweiler
    posted to systems_biology nature_sysbio_08 by shikin to the group GeneGo on 2008-05-04 12:28:11 as *** along with 2 people and 1 group jfr giovanni GeschwindLab
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to systems_biology genomics by shikin to the group GeneGo on 2008-05-04 12:12:12 as ** along with 16 people and 1 group skoch3 jyuh chrisamiller maximilianh vplagnol kintoki chad_davis Ema hpaces aprasad kaniko psique balicea djkt dchughes bpb Koch_Lab
  • How complete are current yeast and human protein-interaction networks?
    Genome Biology, Vol. 7 (01 December 2006), 120.
    by Traver G Hart, Arun K Ramani, Edward M Marcotte
    posted to network ppi systems_biology by shikin to the group GeneGo on 2008-04-17 14:25:58 as ** along with 4 people phoenixzxl carlk eukfn Pao-Yang
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to ppi systems_biology by shikin to the group GeneGo on 2008-04-17 12:38:50 as ** along with 21 people and 5 groups ethkim cerca carlk camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu Evangelia Pao-Yang dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper
  • notes Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
    BMC Bioinformatics, Vol. 8 (04 October 2007), 372.
    by Seth I Berger, Jeremy M Posner, Avi Ma'ayan
    posted to network systems_biology by shikin to the group GeneGo on 2008-04-15 08:14:04 as read along with 2 people jyuh jfr
  • Identification of the Proliferation/Differentiation Switch in the Cellular Network of Multicellular Organisms
    PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e145.
    by Kai Xia, Huiling Xue, Dong Dong, Shanshan Zhu, Jiamu Wang, Qingpeng Zhang, Lei Hou, Hua Chen, Ran Tao, Zheng Huang, Zheng Fu, Ye-Guang Chen, Jing-Dong J Han
    posted to gene_expression network systems_biology by shikin to the group GeneGo on 2008-04-15 07:49:08 as *** along with 3 people and 1 group carlk dolhuis mingzhi SNE
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to network systems_biology by shikin to the group GeneGo on 2008-04-15 07:31:04 as read along with 15 people zdai paolomarcatili Yanno jyuh tmmurali jfr balicea dullhunk neils mikaelhuss cjeans nedwards biehl mclarenv Yumyai
  • Integrative analysis of the cancer transcriptome.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by DR Rhodes, AM Chinnaiyan
    posted to cancer systems_biology by shikin to the group GeneGo on 2008-04-14 19:59:47 as ** along with 5 people and 1 group srp33 waghsk aalibes textoris ealloza BioinfoCIPF
  • From signatures to models: understanding cancer using microarrays.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by E Segal, N Friedman, N Kaminski, A Regev, D Koller
    posted to cancer systems_biology by shikin to the group GeneGo on 2008-04-14 19:57:12 as ** along with 8 people srp33 aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath
  • Understanding biological functions through molecular networks
    Cell Res, Vol. 18, No. 2. (0000), pp. 224-237.
    by Jing-Dong J Han
    posted to network systems_biology by shikin to the group GeneGo on 2008-04-14 19:47:43 as read along with 8 people jyuh cmmorel cabbagezs jo_davies mingzhi giorgiofotia maralena phoenixzxl
  • Network biology: understanding the cell's functional organization.
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by AL Barabási, ZN Oltvai
    posted to barabasi systems_biology by shikin to the group GeneGo on 2008-04-14 19:33:31 as **** along with 34 people and 10 groups hryk camster snuppepuppan dbk greg jyuh LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele Evangelia heliopais streptomyces spliceml dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper
  • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11.
    by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers
    posted to ideker network systems_biology by shikin to the group GeneGo on 2008-04-10 14:12:53 as ** along with 17 people and 2 groups chasmand snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz s041629 pmendes mtruksa kdl EBI-regulation
  • Integration of biological networks and gene expression data using Cytoscape.
    Nat Protoc, Vol. 2, No. 10. (2007), pp. 2366-2382.
    by MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, R Christmas, I Avila-Campilo, M Creech, B Gross, K Hanspers, R Isserlin, R Kelley, S Killcoyne, S Lotia, S Maere, J Morris, K Ono, V Pavlovic, AR Pico, A Vailaya, PL Wang, A Adler, BR Conklin, L Hood, M Kuiper, C Sander, I Schmulevich, B Schwikowski, GJ Warner, T Ideker, GD Bader
    posted to ideker network systems_biology by shikin to the group GeneGo on 2008-04-10 14:10:43 as ** along with 5 people AlexanderPico jyuh jfr shung thomaskelder
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to systems_biology network ideker cancer by shikin to the group GeneGo on 2008-04-10 10:44:58 as ** along with 14 people and 1 group saman_vp verdicchio jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac oelemento roys ptrobajo dap5087 Bioinformatics
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to gene_association genomics network systems_biology by shikin to the group GeneGo on 2008-03-19 11:33:13 as **** along with 12 people jfr chrisamiller echinotrix jyuh natstreet sanchezbuelna djkt raiyar lp2 jo_davies caseybrown ptrobajo
  • Genetics of gene expression and its effect on disease
    Nature (16 March 2008)
    by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, Amy S Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, Bragi G Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G Gislason, Tryggvi Stefansson, Bjorn G Leifsson, Unnur Thorsteinsdottir, John R Lamb, Jeffrey R Gulcher, Marc L Reitman, Augustine Kong, Eric E Schadt, Kari Stefansson
    posted to systems_biology genomics gene_expression by shikin to the group GeneGo on 2008-03-19 11:29:37 as ***** along with 12 people echinotrix Borelli jyuh smbe2008 natstreet sanchezbuelna djkt lp2 jo_davies caseybrown ptrobajo vplagnol
  • The Genomic Landscapes of Human Breast and Colorectal Cancers.
    Science (October 2007)
    by Laura DD Wood, Williams, Siân Jones, Jimmy Lin, Tobias Sjöblom, Rebecca JJ Leary, Dong Shen, Simina MM Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul AA Wilson, Joshua SS Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James KVK Willson, Saraswati Sukumar, Kornelia Polyak, Ben, Charit LL Pethiyagoda, Krishna, Dennis GG Ballinger, Andrew BB Sparks, James Hartigan, Douglas RR Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford DD Markowitz, Giovanni Parmigiani, Kenneth WW Kinzler, Victor EE Velculescu, Bert Vogelstein
    posted to cancer genego_articles systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:35 as ***
  • Molecular definition of breast tumor heterogeneity.
    Cancer Cell, Vol. 11, No. 3. (March 2007), pp. 259-273.
    by M Shipitsin, LL Campbell, P Argani, S Weremowicz, Bloushtain N Qimron, J Yao, T Nikolskaya, T Serebryiskaya, R Beroukhim, M Hu, MK Halushka, S Sukumar, LM Parker, KS Anderson, LN Harris, JE Garber, AL Richardson, SJ Schnitt, Y Nikolsky, RS Gelman, K Polyak
    posted to cancer genego_articles systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:35 as ***
  • Molecular dissection of hyperdiploid multiple myeloma by gene expression profiling.
    Cancer Res, Vol. 67, No. 7. (April 2007), pp. 2982-2989.
    by WJ Chng, S Kumar, S Vanwier, G Ahmann, Price T Troska, K Henderson, TH Chung, S Kim, G Mulligan, B Bryant, J Carpten, M Gertz, SV Rajkumar, M Lacy, A Dispenzieri, R Kyle, P Greipp, PL Bergsagel, R Fonseca
    posted to cancer genego_articles systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:35 as ***
  • Different signaling pathways in the livers of patients with chronic hepatitis B or chronic hepatitis C.
    Hepatology, Vol. 44, No. 5. (November 2006), pp. 1122-1138.
    by M Honda, T Yamashita, T Ueda, H Takatori, R Nishino, S Kaneko
    posted to genego_articles systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:35 as ***
  • Application of transcriptional and biological network analyses in mouse germ-cell transcriptomes.
    Genomics, Vol. 88, No. 1. (July 2006), pp. 18-33.
    by TL Lee, D Alba, V Baxendale, OM Rennert, WY Chan
    posted to genego_articles systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:35 as ***
  • Biological networks and analysis of experimental data in drug discovery.
    Drug Discov Today, Vol. 10, No. 9. (May 2005), pp. 653-662.
    by Y Nikolsky, T Nikolskaya, A Bugrim
    posted to genego_articles systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:34 as ***
  • Transcriptional networks in plasmacytoid dendritic cells stimulated with synthetic TLR 7 agonists
    BMC Immunology, Vol. 8 (October 2007), 26.
    by Woubalem Birmachu, Raymond M Gleason, Barbara J Bulbulian, Christie L Riter, John P Vasilakos, Kenneth E Lipson, Yuri Nikolsky
    posted to genego_articles systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:34 as ***
  • A novel method for generation of signature networks as biomarkers from complex high throughput data.
    Toxicol Lett, Vol. 158, No. 1. (July 2005), pp. 20-29.
    by Y Nikolsky, S Ekins, T Nikolskaya, A Bugrim
    posted to genego_articles systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:34 as ***
  • Defining the transcriptome of accelerated and replicatively senescent keratinocytes reveals links to differentiation, interferon signaling, and Notch related pathways.
    J Cell Biochem, Vol. 98, No. 2. (May 2006), pp. 394-408.
    by RJ Perera, S Koo, CF Bennett, NM Dean, N Gupta, JZ Qin, BJ Nickoloff
    posted to genego_articles pathway-analysis systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:34 as ***
  • Gene Expression Profiling in Lung Tissues from Mice Exposed to Cigarette Smoke, Lipopolysaccharide, or Smoke Plus Lipopolysaccharide by Inhalation
    Inhalation Toxicology, Vol. 18, No. 8. (July 2006), pp. 555-568.
    by Meng, , Gideon, , Harbo, , Renne, , Lee, , Brys, , Jones,
    posted to genego_articles systems_biology by shikin to the group GeneGo on 2008-02-18 15:46:34 as ***
  • Overlapping gene expression profiles of model compounds provide opportunities for immunotoxicity screening.
    Toxicol Appl Pharmacol, Vol. 226, No. 1. (January 2008), pp. 46-59.
    by KA Baken, JL Pennings, MJ Jonker, MM Schaap, A de Vries, H van Steeg, TM Breit, H van Loveren
    posted to genego_articles systems_biology toxicology by shikin to the group GeneGo on 2008-02-18 15:46:34 as ***
  • Early prediction of drug metabolism and toxicity: systems biology approach and modeling.
    Drug Discov Today, Vol. 9, No. 3. (February 2004), pp. 127-135.
    by A Bugrim, T Nikolskaya, Y Nikolsky
    posted to genego_articles systems_biology toxicology by shikin to the group GeneGo on 2008-02-18 15:46:34 as ***
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