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Nature Methods

Articles from the last few issues of Nature Methods © Nature Publishing Group
  • Genomics: when the chemistry is good
    Nature Methods, Vol. 5, No. 9., pp. 843-850.
    by Nathan Blow
  • We the curators
    Nature Methods, Vol. 5, No. 9., pp. 754-755.
    by Allison Doerr
  • New sensors from old
    Nature Methods, Vol. 5, No. 9., pp. 756-756.
    by Daniel Evanko
  • Recombination: it takes four
    Nature Methods, Vol. 5, No. 9., pp. 754-755.
    by Michelle Pflumm
  • Genetically encoded Ca2+ sensors come of age
    Nature Methods, Vol. 5, No. 9., pp. 761-762.
    by Nathalie L Rochefort, Arthur Konnerth
  • Sex to the rescue
    Nature Methods, Vol. 5, No. 9., pp. 759-760.
    by Thomas J Silhavy, Zemer Gitai
  • microRNAs—subtler than you think
    Nature Methods, Vol. 5, No. 9., pp. 753-753.
    by Natalie de Souza
  • Quantum dots versus organic dyes as fluorescent labels
    Nat Meth, Vol. 5, No. 9. (2008), pp. 763-775.
    by Ute Resch-Genger, Markus Grabolle, Sara Cavaliere-Jaricot, Roland Nitschke, Thomas Nann
    posted by 1 person pkner
  • eSGA: E. coli synthetic genetic array analysis
    Nature Methods, Vol. 5, No. 9. (01 August 2008), pp. 789-795.
    by Gareth Butland, Mohan Babu, Javier J Díaz-Mejía, Fedyshyn Bohdana, Sadhna Phanse, Barbara Gold, Wenhong Yang, Joyce Li, Alla G Gagarinova, Oxana Pogoutse, Hirotada Mori, Barry L Wanner, Henry Lo, Jas Wasniewski, Constantine Christopoulos, Mehrab Ali, Pascal Venn, Anahita Safavi-Naini, Natalie Sourour, Simone Caron, Ja-Yeon Choi, Ludovic Laigle, Anaies Nazarians-Armavil, Avnish Deshpande, Sarah Joe, Kirill A Datsenko, Natsuko Yamamoto, Brenda J Andrews, Charles Boone, Huiming Ding, Bilal Sheikh, Gabriel Moreno-Hagelsieb, Jack F Greenblatt, Andrew Emili
  • Imaging dynamic cell-cell junctional coupling in vivo using Trojan-LAMP
    Nature Methods, Vol. 5, No. 9. (01 August 2008), pp. 835-841.
    by Yan-Ming Guo, Shiuhwei Chen, Premnath Shetty, Genhua Zheng, Rueyling Lin, Wen-Hong Li
  • mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.
    Nature methods (17 August 2008)
    by Molly Hammell, Dang Long, Liang Zhang, Andrew Lee, C Steven S Carmack, Min Han, Ye Ding, Victor Ambros
    posted by 1 person maralena
  • Holographic photolysis of caged neurotransmitters
    Nature Methods, Vol. 5, No. 9. (10 August 2008), pp. 821-827.
    by Christoph Lutz, Thomas S Otis, Vincent Desars, Serge Charpak, David A Digregorio, Valentina Emiliani
  • A genetically encoded calcium indicator for chronic in vivo two-photon imaging.
    Nature methods (10 August 2008)
    by Marco Mank, Alexandre Ferrão F Santos, Stephan Direnberger, Thomas D D Mrsic-Flogel, Sonja B B Hofer, Valentin Stein, Thomas Hendel, Dierk F F Reiff, Christiaan Levelt, Alexander Borst, Tobias Bonhoeffer, Mark Hübener, Oliver Griesbeck
  • High-throughput, quantitative analyses of genetic interactions in E. coli.
    Nature methods (1 August 2008)
    by Athanasios Typas, Robert J J Nichols, Deborah A A Siegele, Michael Shales, Sean R R Collins, Bentley Lim, Hannes Braberg, Natsuko Yamamoto, Rikiya Takeuchi, Barry L L Wanner, Hirotada Mori, Jonathan S S Weissman, Nevan J J Krogan, Carol A A Gross
    posted by 2 people jyuh carlk
  • Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.
    Nature methods (17 August 2008)
    by Anton Valouev, David S S Johnson, Andreas Sundquist, Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M M Myers, Arend Sidow
  • Single-spike detection in vitro and in vivo with a genetic Ca2+ sensor
    Nature Methods, Vol. 5, No. 9. (10 August 2008), pp. 797-804.
    by Damian J Wallace, Stephan, Simone Astori, Ying Yang, Melanie Bausen, Sebastian Kügler, Amy E Palmer, Roger Y Tsien, Rolf Sprengel, Jason ND Kerr, Winfried Denk, Mazahir T Hasan
  • Efficient microRNA capture and bar-coding via enzymatic oligonucleotide adenylation
    Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 777-779.
    by Francois Vigneault, Michael A Sismour, George M Church
  • Transcriptome sequencing with the Genome Sequencer FLX system
    Nature Methods, Vol. 5, No. 9.
    by Thomas Jarvie, Timothy Harkins
  • Dry-state, room-temperature storage of DNA and RNA
    Nature Methods, Vol. 5, No. 9.
    by Anjali G Kansagara, Heather E Mcmahon, Michael E Hogan
  • Supernatant in, kinetics out
    Nature Methods, Vol. 5, No. 9.
    by Alexander Kovacs, Liselotte Kaiser
  • Induced pluripotency: is there a silver bullet?
    Nature Methods, Vol. 5, No. 8., pp. 661-661.
    by Natalie de Souza
  • A time stamp for proteins
    Nature Methods, Vol. 5, No. 8., pp. 662-663.
    by Daniel Evanko
  • Talk among histones
    Nature Methods, Vol. 5, No. 8., pp. 662-663.
    by Irene Kaganman
  • Surviving the gas phase
    Nature Methods, Vol. 5, No. 8., pp. 664-664.
    by Allison Doerr
  • Unraveling the nucleosome
    Nature Methods, Vol. 5, No. 8., pp. 666-666.
    by Michelle Pflumm
  • Multiplexing MRI
    Nature Methods, Vol. 5, No. 8., pp. 668-668.
    by Allison Doerr
  • Single-particle tracking: connecting the dots
    Nat Meth, Vol. 5, No. 8. (2008), pp. 671-672.
    by Michael J Saxton
    posted by 1 person melting
  • Engineering GPCR signaling pathways with RASSLs
    Nature Methods, Vol. 5, No. 8. (30 July 2008), pp. 673-678.
    by Bruce R Conklin, Edward C Hsiao, Sylvie Claeysen, Aline Dumuis, Supriya Srinivasan, John R Forsayeth, Jean-Marc Guettier, WC Chang, Ying Pei, Ken D Mccarthy, Robert A Nissenson, Jürgen Wess, Joël Bockaert, Bryan L Roth
  • Alta-Cyclic: a self-optimizing base caller for next-generation sequencing
    Nature Methods, Vol. 5, No. 8. (06 July 2008), pp. 679-682.
    by Yaniv Erlich, Partha P Mitra, Melissa Delabastide, Richard W Mccombie, Gregory J Hannon
  • Improving membrane voltage measurements using FRET with new fluorescent proteins
    Nat Meth, Vol. 5, No. 8. (2008), pp. 683-685.
    by Hidekazu Tsutsui, Satoshi Karasawa, Yasushi Okamura, Atsushi Miyawaki
  • Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes.
    Nature methods (6 July 2008)
    by Arnauld Sergé, Nicolas Bertaux, Hervé Rigneault, Didier Marguet
  • Robust single-particle tracking in live-cell time-lapse sequences.
    Nature methods (20 July 2008)
    by Khuloud Jaqaman, Dinah Loerke, Marcel Mettlen, Hirotaka Kuwata, Sergio Grinstein, Sandra L L Schmid, Gaudenz Danuser
  • Automated analysis of embryonic gene expression with cellular resolution in C. elegans
    Nature Methods, Vol. 5, No. 8. (29 June 2008), pp. 703-709.
    by John I Murray, Zhirong Bao, Thomas J Boyle, Max E Boeck, Barbara L Mericle, Thomas J Nicholas, Zhongying Zhao, Matthew J Sandel, Robert H Waterston
  • A comprehensive strategy enabling high-resolution functional analysis of the yeast genome
    Nature Methods, Vol. 5, No. 8. (11 July 2008), pp. 711-718.
    by David K Breslow, Dale M Cameron, Sean R Collins, Maya Schuldiner, Jacob Stewart-Ornstein, Heather W Newman, Sigurd Braun, Hiten D Madhani, Nevan J Krogan, Jonathan S Weissman
    posted by 1 person jyuh
  • Yeast Barcoders: a chemogenomic application of a universal donor-strain collection carrying bar-code identifiers
    Nature Methods, Vol. 5, No. 8. (11 July 2008), pp. 719-725.
    by Zhun Yan, Michael Costanzo, Lawrence E Heisler, Jadine Paw, Fiona Kaper, Brenda J Andrews, Charles Boone, Guri Giaever, Corey Nislow
  • Detection of heteromerization of more than two proteins by sequential BRET-FRET.
    Nature methods (29 June 2008)
    by Paulina Carriba, Gemma Navarro, Francisco Ciruela, Sergi Ferré, Vicent Casadó, Luigi Agnati, Antoni Cortés, Josefa Mallol, Kjell Fuxe, Enric I I Canela, Carmen Lluís, Rafael Franco
    posted by 2 people zwang jyuh
  • Colloid-guided assembly of oriented 3D neuronal networks.
    Nature methods (20 July 2008)
    by Sophie Pautot, Claire Wyart, Ehud Y Y Isacoff
  • Mass spectrometry and proteomics: hitting the mark
    Nature Methods, Vol. 5, No. 8., pp. 741-747.
    by Nathan Blow
  • Corrigendum: Identification of cross-linked peptides from large sequence databases
    Nature Methods, Vol. 5, No. 8., pp. 748-748.
    by Oliver Rinner, Jan Seebacher, Thomas Walzthoeni, Lukas Mueller, Martin Beck, Alexander Schmidt, Markus Mueller, Ruedi Aebersold
  • Corrigendum: BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals
    Nature Methods, Vol. 5, No. 8., pp. 748-748.
    by Ina Poser, Mihail Sarov, James RA Hutchins, Jean-Karim Hériché, Yusuke Toyoda, Andrei Pozniakovsky, Daniela Weigl, Anja Nitzsche, Björn Hegemann, Alexander W Bird, Laurence Pelletier, Ralf Kittler, Sujun Hua, Ronald Naumann, Martina Augsburg, Martina M Sykora, Helmut Hofemeister, Youming Zhang, Kim Nasmyth, Kevin P White, Steffen Dietzel, Karl Mechtler, Richard Durbin, Francis A Stewart, Jan-Michael Peters, Frank Buchholz, Anthony A Hyman
  • SuperSpinner D 1000: a disposable bioreactor for efficient lab-scale cultivation of animal cells
    Nature Methods, Vol. 5, No. 8.
    by Kathrin Schmale
  • Noninvasive, in vivo quantification of asthma severity using fluorescence molecular tomography
    Nature Methods, Vol. 5, No. 8.
    by Houari Korideck, Jeffrey D Peterson
  • Fish fingers on the menu
    Nature Methods, Vol. 5, No. 7., pp. 579-579.
    by Veronique Kiermer
  • Living droplets
    Nature Methods, Vol. 5, No. 7., pp. 580-581.
    by Daniel Evanko
  • Chemical biology: New electrophilic probes slide in
    Nature Methods, Vol. 5, No. 7., pp. 580-581.
    by Michelle Pflumm
  • Live-cell map quest
    Nature Methods, Vol. 5, No. 7., pp. 582-582.
    by Irene Kaganman
  • The beginning of the end for microarrays?
    Nat Meth, Vol. 5, No. 7. (July 2008), pp. 585-587.
    by Jay Shendure
  • Hunting hidden transcripts
    Nat Meth, Vol. 5, No. 7. (July 2008), pp. 587-589.
    by Piero Carninci
    posted by 1 person megraw
  • Microfluidics: streamlining discovery in worm biology
    Nature Methods, Vol. 5, No. 7., pp. 589-590.
    by Elizabeth S Hulme, Sergey S Shevkoplyas, Aravinthan Samuel
  • Whispering-gallery-mode biosensing: label-free detection down to single molecules
    Nat Meth, Vol. 5, No. 7. (July 2008), pp. 591-596.
    by Frank Vollmer, Stephen Arnold
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