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Mot-clé coli [92 articles]

Recent papers classified by the tag coli.
  • Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: A comparative genomics approach.
    Proc Natl Acad Sci U S A (3 April 2006)
    by Swaine L L Chen, Chia-Seui S Hung, Jian Xu, Christopher S S Reigstad, Vincent Magrini, Aniko Sabo, Darin Blasiar, Tamberlyn Bieri, Rekha R R Meyer, Philip Ozersky, Jon R R Armstrong, Robert S S Fulton, J Phillip P Latreille, John Spieth, Thomas M M Hooton, Elaine R R Mardis, Scott J J Hultgren, Jeffrey I I Gordon
    posted to coli by Xavier on 2008-03-03 18:20:41 as ** along with 2 people and 1 group AaronDarling nickluscombe EBI-regulation
  • The complete genome sequence of Escherichia coli K-12.
    Science, Vol. 277, No. 5331. (5 September 1997), pp. 1453-1474.
    by FR Blattner, G Plunkett, CA Bloch, NT Perna, V Burland, M Riley, J Collado-Vides, JD Glasner, CK Rode, GF Mayhew, J Gregor, NW Davis, HA Kirkpatrick, MA Goeden, DJ Rose, B Mau, Y Shao
    posted to coli by Xavier on 2008-03-03 18:20:23 as ** along with 4 people Cortel bjorns arcticrasta treangen
  • The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes.
    J Bacteriol, Vol. 189, No. 8. (April 2007), pp. 3228-3236.
    by TJ Johnson, S Kariyawasam, Y Wannemuehler, P Mangiamele, SJ Johnson, C Doetkott, JA Skyberg, AM Lynne, JR Johnson, LK Nolan
    posted to coli by Xavier on 2008-03-03 18:21:34 as **
  • Escherichia coli K-12: a cooperatively developed annotation snapshot2005
    Nucleic Acids Research, Vol. 34, No. 1. (2006), pp. 1-9.
    by Monica Riley, Takashi Abe, Martha B Arnaud, Mary K Berlyn, Frederick R Blattner, Roy R Chaudhuri, Jeremy D Glasner, Takashi Horiuchi, Ingrid M Keseler, Takehide Kosuge, Hirotada Mori, Nicole T Perna, Guy Plunkett, Kenneth E Rudd, Margrethe H Serres, Gavin H Thomas, Nicholas R Thomson, David Wishart, Barry L Wanner
    posted to coli by Xavier on 2008-03-05 17:40:31 as ** along with 1 person aswin
  • Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
    Nature, Vol. 409, No. 6819. (25 January 2001), pp. 529-533.
    by Nicole T Perna, Guy Plunkett, Valerie Burland, Bob Mau, Jeremy D Glasner, Debra J Rose, George F Mayhew, Peter S Evans, Jason Gregor, Heather A Kirkpatrick, Gyorgy Posfai, Jeremiah Hackett, Sara Klink, Adam Boutin, Ying Shao, Leslie Miller, Erik J Grotbeck, Wayne N Davis, Alex Lim, Eileen T Dimalanta, Konstantinos D Potamousis, Jennifer Apodaca, Thomas S Anantharaman, Jieyi Lin, Galex Yen, David C Schwartz, Rodney A Welch, Frederick R Blattner
    posted to coli by Xavier on 2008-03-03 18:21:00 as ** along with 2 people kaarsinogen treangen
  • Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.
    DNA Res, Vol. 8, No. 1. (28 February 2001), pp. 11-22.
    by T Hayashi, K Makino, M Ohnishi, K Kurokawa, K Ishii, K Yokoyama, CG Han, E Ohtsubo, K Nakayama, T Murata, M Tanaka, T Tobe, T Iida, H Takami, T Honda, C Sasakawa, N Ogasawara, T Yasunaga, S Kuhara, T Shiba, M Hattori, H Shinagawa
    posted to coli by Xavier on 2008-03-03 18:21:15 as ** along with 1 person and 1 group vwchan beta
  • Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.
    Proc Natl Acad Sci U S A, Vol. 99, No. 26. (24 December 2002), pp. 17020-17024.
    by RA Welch, V Burland, G Plunkett, P Redford, P Roesch, D Rasko, EL Buckles, SR Liou, A Boutin, J Hackett, D Stroud, GF Mayhew, DJ Rose, S Zhou, DC Schwartz, NT Perna, HL Mobley, MS Donnenberg, FR Blattner
    posted to coli by Xavier on 2008-03-03 18:22:02 as ** along with 2 people kaarsinogen madhadron
  • How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains.
    Proc Natl Acad Sci U S A, Vol. 103, No. 34. (22 August 2006), pp. 12879-12884.
    by E Brzuszkiewicz, H Brüggemann, H Liesegang, M Emmerth, T Olschläger, G Nagy, K Albermann, C Wagner, C Buchrieser, L Emody, G Gottschalk, J Hacker, U Dobrindt
    posted to coli by Xavier on 2008-03-03 18:21:49 as **
  • Operons in Escherichia coli: genomic analyses and predictions.
    Proc Natl Acad Sci U S A, Vol. 97, No. 12. (6 June 2000), pp. 6652-6657.
    by H Salgado, G Moreno-Hagelsieb, TF Smith, J Collado-Vides
    posted to bacterial coli escherichia gene operon structure by vladimirov on 2007-10-11 13:29:47 as ** along with 2 people ziquje kaarsinogen
  • Optimal Noise Filtering in the Chemotactic Response of Escherichia coli
    PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e154.
    by Burton W Andrews, Tau-Mu Yi, Pablo A Iglesias
    posted to bacterial cell chemotaxis coli escherichia by vladimirov on 2007-10-02 11:14:18 as ** along with 1 person bayesian
  • On Torque and Tumbling in Swimming Escherichia coli
    J. Bacteriol., Vol. 189, No. 5. (1 March 2007), pp. 1756-1764.
    by Nicholas C Darnton, Linda Turner, Svetlana Rojevsky, Howard C Berg
    posted to bacterial chemotaxis coli escherichia motor by vladimirov on 2007-10-09 14:37:38 as **
  • Isolation and behavior of Escherichia coli deletion mutants lacking chemotaxis functions.
    J. Bacteriol., Vol. 151, No. 1. (1 July 1982), pp. 106-113.
    by JS Parkinson, SE Houts
    posted to chemotaxis coli deletion mutants by vladimirov on 2008-03-14 12:43:49 as **
  • Origins of individual swimming behavior in bacteria.
    Biophys J, Vol. 74, No. 1. (January 1998), pp. 175-181.
    by MD Levin, CJ Morton-Firth, WN Abouhamad, RB Bourret, D Bray
    posted to bacterial cell chemotaxis coli escherichia by vladimirov on 2007-10-02 11:12:42 as ** along with 1 person chrn
  • Cellular Stoichiometry of the Components of the Chemotaxis Signaling Complex
    J. Bacteriol., Vol. 186, No. 12. (15 June 2004), pp. 3687-3694.
    by Mingshan Li, Gerald L Hazelbauer
    posted to chemotaxis coli copy escherichia numbers stoichiometry by vladimirov on 2008-01-31 18:24:49 as ** along with 1 person RebeccaHamer
  • An allosteric model for heterogeneous receptor complexes: Understanding bacterial chemotaxis responses to multiple stimuli
    Proceedings of the National Academy of Sciences, Vol. 102, No. 48. (29 November 2005), pp. 17354-17359.
    by Bernardo A Mello, Yuhai Tu
    posted to bacterial chemotaxis coli escherichia mwc receptor simulation by vladimirov on 2008-01-25 14:50:49 as read
  • Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli.
    J Bacteriol, Vol. 187, No. 1. (January 2005), pp. 45-53.
    by K Lipkow, SS Andrews, D Bray
    posted to bacterial cell chemotaxis coli escherichia by vladimirov on 2007-10-02 12:44:24 as ** along with 6 people and 2 groups chrn roland_ewald mattis23 RebeccaHamer csanford gabe_rosser dIEMoSIRIS MoSi-Rostock
  • Genetic architecture of thermal adaptation in Escherichia coli.
    Proc Natl Acad Sci U S A, Vol. 98, No. 2. (16 January 2001), pp. 525-530.
    by MM Riehle, AF Bennett, AD Long
    posted to coli by struan on 2004-11-15 21:43:47 along with 2 people nsamways treangen
  • Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature.
    Physiol Genomics, Vol. 14, No. 1. (24 June 2003), pp. 47-58.
    by MM Riehle, AF Bennett, RE Lenski, AD Long
    posted to coli by struan on 2004-11-15 21:43:06
  • The Rate of Adaptive Evolution in Enteric Bacteria
    Molecular Biology and Evolution, Vol. 23, No. 7. (July 2006), pp. 1348-1356.
    by Charlesworth, Jane, Eyre-Walker, Adam
    posted to adaptive coli enterica escherichia evolution molevoltestis positive rate salmonella selection substitution by skumagai on 2008-06-06 01:47:48 as read along with 1 person operon
  • An analysis of determinants of amino acids substitution rates in bacterial proteins.
    Mol Biol Evol, Vol. 21, No. 1. (January 2004), pp. 108-116.
    by EP Rocha, A Danchin
    posted to acid amino bacillus coli escherichia expression molevoltestis substitution subtilis by skumagai on 2008-06-06 16:02:41 as read along with 4 people and 1 group bjorns tny penka jpoyatos Nie
  • Convective-Diffusion-Based Fluorescence Correlation Spectroscopy for Detection of a Trace Amount of E. coli in Water
    Appl. Opt., Vol. 42, No. 16. (1 June 2003), pp. 2987-2994.
    by De-Kui Qing, Pinar M Mengüç, Fred A Payne, Mary-Grace C Danao
    posted to coli correlation detection diffusion ecoli escherichia fcs fluorescence spectroscopy water by rodney on 2008-05-31 18:27:36 as **
  • Characterization of photodamage to escherichia coli in optical traps
    Biophys J, Vol. 77, No. 5. (November 1999), pp. 2856-2863.
    by KC Neuman, EH Chadd, GF Liou, K Bergman, SM Block
    posted to coli ecoli escherichia optical photodamage tweezers by rodney on 2007-07-29 22:07:42 as ** along with 1 person and 1 group NicMag Kopelman_Group
  • Genetic tools for selective labeling of proteins with alpha-15N-amino acids.
    J Biomol NMR, Vol. 8, No. 2. (September 1996), pp. 184-192.
    by DS Waugh
    posted to auxotroph coli ct19 nmr by netterpaladin on 2007-10-23 11:23:29 as **
  • Global topology analysis of the Escherichia coli inner membrane proteome.
    Science, Vol. 308, No. 5726. (27 May 2005), pp. 1321-1323.
    by DO Daley, M Rapp, E Granseth, K Melen, D Drew, G von Heijne
    posted to coli mdr by netterpaladin on 2007-10-12 13:25:22 as **
  • The specific incorporation of labelled aromatic amino acids into proteins through growth of bacteria in the presence of glyphosate. Application to fluorotryptophan labelling to the H(+)-ATPase of Escherichia coli and NMR studies.
    FEBS Lett, Vol. 272, No. 1-2. (15 October 1990), pp. 34-36.
    by HW Kim, JA Perez, SJ Ferguson, ID Campbell
    posted to 19f coli labeling nmr tryptophan by netterpaladin on 2007-10-25 08:39:46 as **
  • Wild-type Escherichia coli Cells Regulate the Membrane Lipid Composition in a “Window” between Gel and Non-lamellar Structures
    J. Biol. Chem., Vol. 271, No. 12. (22 March 1996), pp. 6801-6809.
    by Sven Morein, Ann-Sofie Andersson, Leif Rilfors, Göran Lindblom
    posted to coli membrane by netterpaladin on 2007-10-16 15:30:45 as ** along with 1 person viktor21614
  • Genome-Scale Thermodynamic Analysis of Escherichia coli Metabolism
    Biophys. J., Vol. 90, No. 4. (15 February 2006), pp. 1453-1461.
    by Christopher S Henry, Matthew D Jankowski, Linda J Broadbelt, Vassily Hatzimanikatis
    posted to coli escherichia thermodynamics by lylu on 2007-12-29 05:45:55 as ** along with 2 people csanford JeremyZucker
  • Transport of Escherichia coli Through Intact and Disturbed Soil Columns
    J Environ Qual, Vol. 14, No. 1. (1 January 1985), pp. 87-91.
    by MS Smith, GW Thomas, RE White, D Ritonga
    posted to coli columns e saturated by karthikeyan on 2008-05-30 21:26:55 as **
  • The molecular genetics of superoxide dismutase in E. coli.
    Free Radic Res Commun, Vol. 12-13 Pt 1 (1991), pp. 379-382.
    by D Touati
    posted to coli e sod by johncumbers on 2006-08-05 19:41:02 as ****
  • Aging and Death in an Organism That Reproduces by Morphologically Symmetric Division.
    PLoS Biol, Vol. 3, No. 2. (1 February 2005)
    by Eric J J Stewart, Richard Madden, Gregory Paul, François Taddei
    posted to aging bacteria cell coli division e by johncumbers on 2006-08-04 22:29:25 as ***** along with 5 people Retchless greger_halltorp mroutley austin madhadron
  • Polyamines protect Escherichia coli cells from the toxic effect of oxygen.
    Proc Natl Acad Sci U S A, Vol. 100, No. 5. (4 March 2003), pp. 2261-2265.
    by MK Chattopadhyay, CW Tabor, H Tabor
    posted to aging coli e by johncumbers on 2006-08-05 19:49:18 as ****
  • Network motifs in the transcriptional regulation network of Escherichia coli
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 64-68.
    by Shai S Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon
    posted to coli e gene genome motif network organization by jayster4 on 2007-06-08 06:45:54 as ** along with 13 people and 1 group jstajic jjray ssb nickluscombe gurkanbebek jtaylor karfunkel blobbybirdman zibuyu maralena hannahrajasingh Borelli ethkim EBI-regulation
  • OrthoDisease: a database of human disease orthologs.
    Hum Mutat, Vol. 24, No. 2. (August 2004), pp. 112-119.
    by KP O'Brien, I Westerlund, EL Sonnhammer
    posted to analysis animal animals arabidopsis bacterial caenorhabditis cerevisiae cluster coli databases design disease diseases drosophila elegans escherichia evolution fungal genetic genome human humans inborn inparanoid melanogaster mice models molecular plant proteome saccharomyces software by incovoma on 2007-07-30 17:36:23 as ** along with 1 person tmmurali
  • Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli
    Mol Syst Biol, Vol. 3 (10 July 2007)
    by Robert Schuetz, Lars Kuepfer, Uwe Sauer
    posted to coli escherichia flux by robertvandenberg to the group Bioinformatics on 2008-04-06 12:27:04 as ** along with 5 people alexg fishtank zwang Ema michaelbarton
  • Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth
    BMC Genomics, Vol. 9 (27 May 2008), 247.
    by Ju-Hoon Lee, VN Karamychev, SA Kozyavkin, D Mills, AR Pavlov, NV Pavlova, NN Polouchine, PM Richardson, VV Shakhova, AI Slesarev, B Weimer, DJ O'Sullivan
    posted to arsenic bifidobacterium clostridium coli colon difficile genome gut health intestinal is30 lantibiotic longum probiotic probiotics by bfm to the group probiotic on 2008-06-20 06:02:48 as ***** along with 1 person Olaf_Ilzins
  • The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
    Nature Biotechnology, Vol. 26, No. 6. (06 June 2008), pp. 659-667.
    by Adam M Feist, Bernhard
    posted to coli genome metabolic network reconstruction by gcarbajosa to the group TNT on 2008-07-10 11:41:39 as ** along with 4 people and 1 group fishtank ptrobajo michaelbarton AlexanderPico BergmanLab
  • High efficiency transformation of E. coli by high voltage electroporation.
    Nucleic acids research, Vol. 16, No. 13. (11 July 1988), pp. 6127-6145.
    by WJ Dower, JF Miller, CW Ragsdale
    posted to coli electroporation electrotransformation escherichia transformation by fhsantanna on 2008-06-25 17:49:03 as **
  • Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export.
    Nature, Vol. 405, No. 6789. (22 June 2000), pp. 914-919.
    by V Koronakis, A Sharff, E Koronakis, B Luisi, C Hughes
    posted to coli e structure tolc by EvaKaltenborn on 2008-01-19 15:31:35 as ** along with 2 people martainn cam-flagella
  • The Escherichia coli ATP-binding cassette (ABC) proteins
    Molecular Microbiology, Vol. 28, No. 1. (1998), pp. 5-13.
    by Kenneth J Linton, Christopher F Higgins
    posted to abc coli e transporter by EvaKaltenborn on 2008-01-08 10:52:55 as **
  • The E. coli BtuCD Structure: A Framework for ABC Transporter Architecture and Mechanism
    Science, Vol. 296, No. 5570. (10 May 2002), pp. 1091-1098.
    by Kaspar P Locher, Allen T Lee, Douglas C Rees
    posted to abc btucd coli e transporter by EvaKaltenborn on 2008-01-08 12:30:30 as ** along with 2 people aqeel happy_manatee
  • Role of Membrane Fluidity in Pressure Resistance of Escherichia coli NCTC 8164
    Appl. Environ. Microbiol., Vol. 68, No. 12. (1 December 2002), pp. 5965-5972.
    by MA Casadei, P Manas, G Niven, E Needs, BM Mackey
    posted to coli escherichia fluidity membrane pressure resistance by ElenaCrisza on 2006-10-13 10:11:37 as *****
  • High pressure represses expression of the malB operon in Escherichia coli
    FEMS Microbiology Letters, Vol. 135, No. 1. (1996), pp. 111-116.
    by Takako Sato, Yuka Nakamura, Kyoko K Nakashima, Chiaki Kato, Koki Horikoshi
    posted to coli escherichia high malb operon pressure by ElenaCrisza on 2006-10-13 10:37:09 as *****
  • Metabolic flux analysis for a ppc mutant Escherichia coli based on 13C-labelling experiments together with enzyme activity assays and intracellular metabolite measurements.
    FEMS Microbiol Lett, Vol. 235, No. 1. (1 June 2004), pp. 17-23.
    by L Peng, MJ Arauzo-Bravo, K Shimizu
    posted to 13c-labelling coli e engineering metabolic ms mutant nmr ppc by echcram on 2007-06-14 15:27:59 as *****
  • Effect of a pyruvate kinase (pykF-gene) knockout mutation on the control of gene expression and metabolic fluxes in Escherichia coli.
    FEMS Microbiol Lett, Vol. 235, No. 1. (1 June 2004), pp. 25-33.
    by KA Siddiquee, MJ Arauzo-Bravo, K Shimizu
    posted to analysis coli e engineering flux metabolic pykf by echcram on 2007-06-14 15:30:33 as *****
  • Leukocytosis as a predictor for progression to haemolytic uraemic syndrome in Escherichia coli O157:H7 infection
    Arch Dis Child, Vol. 92, No. 9. (1 September 2007), pp. 820-823.
    posted to coli escherichia haemolytic leukocytosis o157h7 syndrome uraemic by dranjay on 2008-05-18 18:15:17 as ** along with 1 person Amazoness
  • Promoter unwinding and promoter clearance by RNA polymerase: Detection by single-molecule DNA nanomanipulation
    PNAS, Vol. 101, No. 14. (6 April 2004), pp. 4776-4780.
    by Andrey Revyakin, Richard H Ebright, Terence R Strick
    posted to activation burst coli noise regulation size transcription by discreteonyxorb on 2007-04-06 03:11:56 as **
  • Regulation of the -arabinose operon of Escherichia coli
    Trends in Genetics, Vol. 16, No. 12. (1 December 2000), pp. 559-565.
    by Robert Schleif
    posted to activation arabinose arac architecture bacteria coli combinatorial crp initiation logic polymerase promoter regulation transcription by discreteonyxorb on 2007-05-12 05:19:24 as ** along with 1 person balabu
  • AraC protein can activate transcription from only one position and when pointed in only one direction.
    J Mol Biol, Vol. 231, No. 2. (20 May 1993), pp. 205-218.
    by T Reeder, R Schleif
    posted to activation arabinose arac architecture bacteria coli combinatorial crp initiation polymerase promoter transcription by discreteonyxorb on 2007-05-03 22:31:05 as ****
  • The roles of residues 5 and 9 of the recognition helix of Lac repressor in lac operator binding.
    J Mol Biol, Vol. 218, No. 2. (20 March 1991), pp. 313-321.
    by J Sartorius, N Lehming, B Kisters-Woike, B von Wilcken-Bergmann, B Müller-Hill
    posted to bacteria coli consensus by discreteonyxorb on 2007-06-18 07:02:19 as **
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to activation activator arabinose arac architecture bacteria bioinformatics biology circuits coli combinatorial comparative experimental factor gene initiation interaction lac laci library logic luciferase model noncoding operator organization polymerase prokaryote promoter protein regulation repression repressor sequence synthetic transcription by discreteonyxorb on 2007-11-13 20:48:20 as ***** along with 14 people and 2 groups Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans zwang cabbagezs Ema tresch EisenLab SynBioSys
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