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de Evangelia library [307 articles]

Articles dernièrement stockés dans la bibliothèque de Evangelia .
  • Discovering sequence motifs with arbitrary insertions and deletions.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by MC Frith, NF Saunders, B Kobe, TL Bailey
    posted to statistics peptides motifs by Evangelia on 2008-08-25 10:41:35 as ** along with 6 people Ema dquest Stew gjuggler neils cabbagesofdoom
  • A computational strategy for the prediction of functional linear peptide motifs in proteins
    Bioinformatics (31 October 2007), btm524.
    by Holger Dinkel, Heinrich Sticht
    posted to statistics peptides motif computational by Evangelia on 2008-08-25 10:39:46 as ** along with 1 person cjeans
  • How does DNA sequence motif discovery work?
    Nature Biotechnology, Vol. 24, No. 8., pp. 959-961.
    by Patrik D'Haeseleer
    posted to motif by Evangelia on 2008-08-22 16:20:08 as ** along with 6 people and 1 group chad_davis isimpson okarsligil antonkratz xi03 idonaldson Bioinformatics
  • Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures.
    BMC Bioinformatics, Vol. 5 (9 January 2004)
    by V Alexandrov, M Gerstein
    posted to structure profile hmm by Evangelia on 2008-08-21 12:25:07 as ** along with 1 person chad_davis
  • Massive peptide sharing between viral and human proteomes
    Peptides, Vol. In Press, Corrected Proof
    by Darja Kanduc, Angela Stufano, Guglielmo Lucchese, Anthony Kusalik
    posted to peptides by Evangelia on 2008-08-21 12:17:04 as **
  • MSDmotif: exploring protein sites and motifs
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Adel Golovin, Kim Henrick
    posted to statistics motif by Evangelia on 2008-08-21 11:00:43 as ** along with 3 people chad_davis massivemayhem reyez
  • Efficient representation and P-value computation for high-order Markov motifs
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i160-166.
    by Paulo G da Fonseca, Katia S Guimaraes, Marie-France Sagot
    posted to statistics computational by Evangelia on 2008-08-21 10:53:28 as *** along with 1 person Stew
  • Information content of binding sites on nucleotide sequences
    Journal of Molecular Biology, Vol. 188, No. 3. (5 April 1986), pp. 415-431.
    by Thomas D Schneider, Gary D Stormo, Larry Gold, Andrzej Ehrenfeucht
    posted to statistics computational by Evangelia on 2008-08-21 10:01:52 as ***
  • An unconventional IAP-binding motif revealed by target-assisted iterative screening (TAIS) of the BIR3-cIAP1 domain.
    Journal of molecular recognition : JMR, Vol. 20, No. 1. (b 2007), pp. 39-50.
    by A Kurakin, DE Bredesen
    posted to peptides example by Evangelia on 2008-07-01 15:28:45 as **
  • The mechanism of peptide-binding specificity of IAP BIR domains
    Cell Death and Differentiation, Vol. aop, No. current.
    by BP Eckelman, M Drag, SJ Snipas, GS Salvesen
    posted to peptides example by Evangelia on 2008-07-01 15:24:17 as **
  • The interaction of DIAP1 with dOmi/HtrA2 regulates cell death in Drosophila
    Cell Death and Differentiation, Vol. aop, No. current.
    by FS Khan, M Fujioka, P Datta, T Fernandes-Alnemri, JB Jaynes, ES Alnemri
    posted to peptide example by Evangelia on 2008-07-01 15:23:26 as **
  • Structure of a NEMO/IKK-Associating Domain Reveals Architecture of the Interaction Site
    Structure, Vol. 16, No. 5. (7 May 2008), pp. 798-808.
    by Mia Rushe, Laura Silvian, Sarah Bixler, Ling L Chen, Anne Cheung, Scott Bowes, Hernan Cuervo, Steven Berkowitz, Timothy Zheng, Kevin Guckian, Maria Pellegrini, Alexey Lugovskoy
    posted to peptide example by Evangelia on 2008-07-01 15:22:25 as read
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to interactions human by Evangelia on 2008-06-19 09:58:27 as *** along with 20 people bpcusack dragonrez chad_davis balicea marck paolomarcatili sanchezbuelna cabbagesofdoom xingxu mjoach jyuh chrissp100 zwang roys brianb friendpine Ema neils tmmurali phoenixzxl
  • Decoding of Methylated Histone H3 Tail by the Pygo-BCL9 Wnt Signaling Complex
    Molecular Cell, Vol. 30, No. 4. (23 May 2008), pp. 507-518.
    by Marc Fiedler, María J Sánchez-Barrena, Maxim Nekrasov, Juliusz Mieszczanek, Vladimir Rybin, Jürg Müller, Phil Evans, Mariann Bienz
    posted to peptides example by Evangelia on 2008-06-18 12:23:29 as read
  • High-resolution X-ray and NMR Structures of the SMN Tudor Domain: Conformational Variation in the Binding Site for Symmetrically Dimethylated Arginine Residues
    Journal of Molecular Biology, Vol. 327, No. 2. (21 March 2003), pp. 507-520.
    by Remco Sprangers, Matthew R Groves, Irmgard Sinning, Michael Sattler
    posted to example by Evangelia on 2008-06-05 12:57:40 as read
  • EBV LMP2A affects LMP1-mediated NF-kappaB signaling and survival of lymphoma cells by regulating TRAF2 expression
    Blood, Vol. 111, No. 7. (1 April 2008), pp. 3813-3820.
    by Ilaria Guasparri, Darya Bubman, Ethel Cesarman
    posted to example by Evangelia on 2008-06-03 12:24:25 as read
  • Phosphorylation meets ubiquitination: the control of NF-[kappa]B activity.
    Annu Rev Immunol, Vol. 18 (2000), pp. 621-663.
    by M Karin, Y Ben-Neriah
    posted to example by Evangelia on 2008-06-03 10:27:39 as read along with 1 person imouthesmp
  • Signal transduction by tumor necrosis factor and its relatives
    Trends in Cell Biology, Vol. 11, No. 9. (1 September 2001), pp. 372-377.
    by Véronique Baud, Michael Karin
    posted to signaling example by Evangelia on 2008-06-03 08:52:29 as read
  • The TNF receptor 1-associated protein TRADD signals cell death and NF-[kappa]B activation
    Cell, Vol. 81, No. 4. (19 May 1995), pp. 495-504.
    by Hailing Hsu, Jessie Xiong, David V Goeddel
    posted to example by Evangelia on 2008-06-03 08:42:09 as read
  • Mechanism of activation of the Formin protein Daam1
    Proceedings of the National Academy of Sciences, Vol. 105, No. 1. (8 January 2008), pp. 210-215.
    by Wei Liu, Akira Sato, Deepak Khadka, Ritu Bharti, Hector Diaz, Loren W Runnels, Raymond Habas
    posted to peptides example by Evangelia on 2008-05-30 14:41:21 as **
  • ERK promotes tumorigenesis by inhibiting FOXO3a via MDM2-mediated degradation.
    Nat Cell Biol (20 January 2008)
    by Jer-Yen Y Yang, Cong S S Zong, Weiya Xia, Hirohito Yamaguchi, Qingqing Ding, Xiaoming Xie, Jing-Yu Y Lang, Chien-Chen C Lai, Chun-Ju J Chang, Wei-Chien C Huang, Hsin Huang, Hsu-Ping P Kuo, Dung-Fang F Lee, Long-Yuan Y Li, Huang-Chun C Lien, Xiaoyun Cheng, King-Jen J Chang, Chwan-Deng D Hsiao, Fuu-Jen J Tsai, Chang-Hai H Tsai, Aysegul A A Sahin, William J J Muller, Gordon B B Mills, Dihua Yu, Gabriel N N Hortobagyi, Mien-Chie C Hung
    posted to peptides example by Evangelia on 2008-05-30 14:39:46 as ** along with 2 people jyuh jackjackjjj
  • The 7-amino-acid site in the proline-rich region of the N-terminal domain of p53 is involved in the interaction with FAK and is critical for p53 functioning
    Biochem. J., Vol. 411, No. 1. (1 April 2008), pp. 151-60.
    by VM Golubovskaya, R Finch, M Zheng, EV Kurenova, Cance
    posted to proline peptides example by Evangelia on 2008-05-30 14:38:03 as **
  • HIV-1 Nef disrupts the podocyte actin cytoskeleton by interacting with diaphanous interacting protein (DIP)
    J. Biol. Chem. (30 January 2008), M708920200.
    by Ting-Chi Lu, John C He, Zhaohui Wang, Xiaobei Feng, Tomoko Fukumi-Tominaga, Nan Chen, Jin Xu, Ravi Iyengar, Paul E Klotman
    posted to peptides hiv example by Evangelia on 2008-05-30 14:35:23 as **
  • Sirt2 interacts with 14-3-3 beta/gamma and down-regulates the activity of p53.
    Biochem Biophys Res Commun (1 February 2008)
    by Yun-Hye H Jin, Yeon-Jin J Kim, Dae-Won W Kim, Kwang-Hyun H Baek, Bok Yun Y Kang, Chang-Yeol Y Yeo, Kwang-Youl Y Lee
    posted to peptides example by Evangelia on 2008-05-30 14:33:53 as ** along with 1 person jyuh
  • HIV-1 envelope protein binds to and signals through integrin α4β7, the gut mucosal homing receptor for peripheral T cells
    Nature Immunology, Vol. 9, No. 3. (10 February 2008), pp. 301-309.
    by James Arthos, Claudia Cicala, Elena Martinelli, Katilyn Macleod, Donald Van Ryk, Danlan Wei, Zhen Xiao, Timothy D Veenstra, Thomas P Conrad, Richard A Lempicki, Sherry Mclaughlin, Massimiliano Pascuccio, Ravindra Gopaul, Jonathan Mcnally, Catherine C Cruz, Nina Censoplano, Eva Chung, Kristin N Reitano, Shyam Kottilil, Diana J Goode, Anthony S Fauci
    posted to peptide hiv example by Evangelia on 2008-05-30 14:32:22 as ** along with 1 person boudinot
  • Targeting the c-Myc coiled coil with interfering peptides.
    J Pept Sci. (9 May 2008)
    by EM Jouaux, K Schmidtkunz, KM Müller, KM Arndt
    posted to rev_ref peptide by Evangelia on 2008-05-23 16:31:26 as **
  • Intrinsic Protein Disorder in Complete Genomes
    Genome Inform Ser Workshop Genome Inform., Vol. 11 (2000), pp. 161-71.
    by AK Dunker, Z Obradovic, Romero, EC Garner, CJ Brown
    posted to rev_ref protein disorder by Evangelia on 2008-05-23 16:24:19 as read
  • Dissecting p53-dependent apoptosis
    Cell Death and Differentiation, Vol. aop, No. current.
    by JE Chipuk, DR Green
    posted to review pathways p53 by Evangelia on 2008-05-23 08:15:57 as read
  • Specificity and versatility of SH3 and other proline-recognition domains: structural basis and implications for cellular signal transduction.
    The Biochemical journal, Vol. 390, No. Pt 3. (15 September 2005), pp. 641-653.
    by SS Li
    posted to specificity sh3 peptides by Evangelia on 2008-05-23 07:47:48 as **
  • The Structure and Function of Proline Recognition Domains
    Sci. STKE, Vol. 2003, No. 179. (22 April 2003), re8.
    by Ali Zarrinpar, Roby P Bhattacharyya, Wendell A Lim
    posted to structure review proline-rich peptides by Evangelia on 2008-05-23 07:28:27 as **
  • The Phosphatase Cdc14 Triggers Mitotic Exit by Reversal of Cdk-Dependent Phosphorylation
    Molecular Cell, Vol. 2, No. 6. (December 1998), pp. 709-718.
    by Rosella Visintin, Karen Craig, Ellen S Hwang, Susanne Prinz, Mike Tyers, Angelika Amon
    posted to peptides interaction example by Evangelia on 2008-05-21 14:29:39 as **
  • Human biliverdin reductase is an ERK activator; hBVR is an ERK nuclear transporter and is required for MAPK signaling
    Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 6870-6875.
    by Nicole Lerner-Marmarosh, Tihomir Miralem, Peter E Gibbs, Mahin D Maines
    posted to signaling peptides experimental example by Evangelia on 2008-05-21 14:05:07 as **
  • Dissection of the insulin signaling pathway via quantitative phosphoproteomics
    Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2451-2456.
    by Marcus Kruger, Irina Kratchmarova, Blagoy Blagoev, Yu-Hua Tseng, Ronald C Kahn, Matthias Mann
    posted to peptides pathways example by Evangelia on 2008-05-21 14:02:57 as ** along with 3 people jyuh brianb renatomilani
  • Rho-Kinase Phosphorylates PAR-3 and Disrupts PAR Complex Formation
    Developmental Cell, Vol. 14, No. 2. (12 February 2008), pp. 205-215.
    by Masanori Nakayama, Takaaki M Goto, Masayuki Sugimoto, Takashi Nishimura, Takafumi Shinagawa, Sigeo Ohno, Mutsuki Amano, Kozo Kaibuchi
    posted to phospho_peptides peptides experimental example by Evangelia on 2008-05-21 14:00:29 as **
  • The Viral Oncoprotein LMP1 Exploits TRADD for Signaling by Masking Its Apoptotic Activity
    PLoS Biology, Vol. 6, No. 1. (1 January 2008), e8.
    by Frank Schneider, Julia Neugebauer, Janine Griese, Nicola Liefold, Helmut Kutz, Cinthia Briseño, Arnd Kieser
    posted to peptides experimental example by Evangelia on 2008-05-21 13:58:16 as ** along with 1 person biomcgary
  • Small molecule obatoclax (GX15-070) antagonizes MCL-1 and overcomes MCL-1-mediated resistance to apoptosis.
    Proc Natl Acad Sci U S A, Vol. 104, No. 49. (4 December 2007), pp. 19512-19517.
    by M Nguyen, RC Marcellus, A Roulston, M Watson, L Serfass, SR Murthy Madiraju, D Goulet, J Viallet, L Bélec, X Billot, S Acoca, E Purisima, A Wiegmans, L Cluse, RW Johnstone, P Beauparlant, GC Shore
    posted to peptides experimental example by Evangelia on 2008-05-21 13:57:03 as ** along with 2 people higueruelo jyuh
  • Potent D-peptide inhibitors of HIV-1 entry
    Proceedings of the National Academy of Sciences, Vol. 104, No. 43. (23 October 2007), pp. 16828-16833.
    by Brett D Welch, Andrew P Vandemark, Annie Heroux, Christopher P Hill, Michael S Kay
    posted to peptides experimental example by Evangelia on 2008-05-21 13:54:58 as **
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology:, Vol. 3, No. 9. (September 2007), pp. 1783-9.
    by D Betel, KE Breitkreuz, R Isserlin, D Dewar-Darch, M Tyers, CW Hogue
    posted to protein peptides interactions computational by Evangelia on 2008-05-21 13:53:24 as ****
  • Control of Emi2 activity and stability through Mos-mediated recruitment of PP2A
    Proceedings of the National Academy of Sciences, Vol. 104, No. 42. (16 October 2007), pp. 16564-16569.
    by Judy Q Wu, David V Hansen, Yanxiang Guo, Michael Z Wang, Wanli Tang, Christopher D Freel, Jeffrey J Tung, Peter K Jackson, Sally Kornbluth
    posted to peptides experimental example by Evangelia on 2008-05-21 13:25:37 as **
  • Spatial regulation of Raf kinase signaling by RKTG
    Proceedings of the National Academy of Sciences, Vol. 104, No. 36. (4 September 2007), pp. 14348-14353.
    by Lin Feng, Xiaoduo Xie, Qiurong Ding, Xiaolin Luo, Jing He, Fengjuan Fan, Weizhong Liu, Zhenzhen Wang, Yan Chen
    posted to signaling peptides experimental example by Evangelia on 2008-05-21 13:23:21 as **
  • An Essential Role for 14-3-3 Proteins in Brassinosteroid Signal Transduction in Arabidopsis
    Developmental Cell, Vol. 13, No. 2. (7 August 2007), pp. 177-189.
    by Srinivas S Gampala, Tae-Wuk Kim, Jun-Xian He, Wenqiang Tang, Zhiping Deng, Mingyi-Yi Bai, Shenheng Guan, Sylvie Lalonde, Ying Sun, Joshua M Gendron, Huanjing Chen, Nakako Shibagaki, Robert J Ferl, David Ehrhardt, Kang Chong, Alma L Burlingame, Zhi-Yong Wang
    posted to signaling peptides experimental example by Evangelia on 2008-05-21 13:21:43 as **
  • 14-3-3 Proteins in Plant Brassinosteroid Signaling
    Developmental Cell, Vol. 13, No. 2. (7 August 2007), pp. 162-164.
    by Sacco C de Vries
    posted to peptides experimental example by Evangelia on 2008-05-21 13:20:50 as **
  • Design of helical, oligomeric HIV-1 fusion inhibitor peptides with potent activity against enfuvirtide-resistant virus
    Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12772-12777.
    by John J Dwyer, Karen L Wilson, Donna K Davison, Stephanie A Freel, Jennifer E Seedorff, Stephen A Wring, Nicolai A Tvermoes, Thomas J Matthews, Michael L Greenberg, Mary K Delmedico
    posted to peptides experimental example by Evangelia on 2008-05-21 13:19:24 as **
  • U2AF-homology motif interactions are required for alternative splicing regulation by SPF45
    Nature Structural & Molecular Biology, Vol. 14, No. 7. (24 June 2007), pp. 620-629.
    by Lorenzo Corsini, Sophie Bonna, Jerome Basquin, Michael Hothorn, Klaus Scheffzek, Juan Valcárcel, Michael Sattler
    posted to peptides motifs experimental example by Evangelia on 2008-05-21 13:18:28 as **
  • Cellular prion protein regulates beta-secretase cleavage of the Alzheimer's amyloid precursor protein
    Proceedings of the National Academy of Sciences, Vol. 104, No. 26. (26 June 2007), pp. 11062-11067.
    by Edward T Parkin, Nicole T Watt, Ishrut Hussain, Elizabeth A Eckman, Christopher B Eckman, Jean C Manson, Herbert N Baybutt, Anthony J Turner, Nigel M Hooper
    posted to peptides experimental example by Evangelia on 2008-05-21 13:17:19 as ** along with 1 person applebyb
  • IQGAP1 modulates activation of B-Raf
    Proceedings of the National Academy of Sciences, Vol. 104, No. 25. (19 June 2007), pp. 10465-10469.
    by Jian-Guo Ren, Zhigang Li, David B Sacks
    posted to peptides experimental example by Evangelia on 2008-05-21 13:15:13 as **
  • Binding of Ras to Phosphoinositide 3-Kinase p110alpha Is Required for Ras- Driven Tumorigenesis in Mice.
    Cell, Vol. 129, No. 5. (1 June 2007), pp. 957-968.
    by S Gupta, AR Ramjaun, P Haiko, Y Wang, PH Warne, B Nicke, E Nye, G Stamp, K Alitalo, J Downward
    posted to peptides experimental example by Evangelia on 2008-05-21 13:14:15 as ** along with 2 people Terkko catcremona
  • Stopping Ras in Its Tracks
    Cell, Vol. 129, No. 5. (1 June 2007), pp. 855-857.
    by Channing J Der, Terry Van Dyke
    posted to peptides experimental example by Evangelia on 2008-05-21 13:13:18 as **
  • Studies on peptide:N-glycanase-p97 interaction suggest that p97 phosphorylation modulates endoplasmic reticulum-associated degradation
    Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8785-8790.
    by Gang Zhao, Xiaoke Zhou, Liqun Wang, Guangtao Li, Hermann Schindelin, William J Lennarz
    posted to peptides experimental example by Evangelia on 2008-05-21 13:11:40 as **
  • Stabilization of RAD-51-DNA filaments via an interaction domain in Caenorhabditis elegans BRCA2
    Proceedings of the National Academy of Sciences, Vol. 104, No. 20. (15 May 2007), pp. 8299-8304.
    by Mark I Petalcorin, Vitold E Galkin, Xiong Yu, Edward H Egelman, Simon J Boulton
    posted to peptides experimental example cancer by Evangelia on 2008-05-21 13:09:37 as **
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