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de JeremyZucker library [209 articles]

Articles dernièrement stockés dans la bibliothèque de JeremyZucker .
  • Scaled Boolean Algebras
    (23 Mar 2002)
    by Michael Hardy
    posted to uncertainty pln agi by JeremyZucker on 2008-08-10 09:21:55 as **
  • The largest open reading frame (pks12) in the Mycobacterium tuberculosis genome is involved in pathogenesis and dimycocerosyl phthiocerol synthesis.
    Infection and immunity, Vol. 71, No. 7. (July 2003), pp. 3794-3801.
    by TD Sirakova, VS Dubey, HJ Kim, MH Cynamon, PE Kolattukudy
    posted to tb pks12 fatty-acid by JeremyZucker on 2008-08-09 07:46:49 as **
  • The acyl-AMP ligase FadD32 and AccD4-containing acyl-CoA carboxylase are required for the synthesis of mycolic acids and essential for mycobacterial growth: identification of the carboxylation product and determination of the acyl-CoA carboxylase components.
    The Journal of biological chemistry, Vol. 280, No. 10. (11 March 2005), pp. 8862-8874.
    by D Portevin, C de Sousa-D'Auria, H Montrozier, C Houssin, A Stella, MA Lanéelle, F Bardou, C Guilhot, M Daffé
    posted to tb mycolic-acid fadd32 accd4 by JeremyZucker on 2008-08-09 06:56:54 as **
  • notes Mycolic acids: structure, biosynthesis and physiological functions.
    Prog Lipid Res, Vol. 37, No. 2-3. (g 1998), pp. 143-179.
    by CE Barry, RE Lee, K Mdluli, AE Sampson, BG Schroeder, RA Slayden, Y Yuan
    posted to unk1 tb mycolic-acid fabg desa by JeremyZucker on 2008-08-09 06:48:15 as ** along with 1 person madhadron
  • notes MabA (FabG1), a Mycobacterium tuberculosis protein involved in the long-chain fatty acid elongation system FAS-II.
    Microbiology (Reading, England), Vol. 148, No. Pt 4. (April 2002), pp. 951-960.
    by H Marrakchi, S Ducasse, G Labesse, H Montrozier, E Margeat, L Emorine, X Charpentier, M Daffé, A Quémard
    posted to tb fatty-acid by JeremyZucker on 2008-08-09 06:45:01 as **
  • notes Mycolic acid biosynthesis and enzymic characterization of the beta-ketoacyl-ACP synthase A-condensing enzyme from Mycobacterium tuberculosis.
    The Biochemical journal, Vol. 364, No. Pt 2. (1 June 2002), pp. 423-430.
    by L Kremer, LG Dover, S Carrère, KM Nampoothiri, S Lesjean, AK Brown, PJ Brennan, DE Minnikin, C Locht, GS Besra
    posted to tb mycolic-acid by JeremyZucker on 2008-08-09 06:43:16 as **
  • notes Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.
    Nature, Vol. 393, No. 6685. (11 June 1998), pp. 537-544.
    by ST Cole, R Brosch, J Parkhill, T Garnier, C Churcher, D Harris, SV Gordon, K Eiglmeier, S Gas, CE Barry, F Tekaia, K Badcock, D Basham, D Brown, T Chillingworth, R Connor, R Davies, K Devlin, T Feltwell, S Gentles, N Hamlin, S Holroyd, T Hornsby, K Jagels, A Krogh, J McLean, S Moule, L Murphy, K Oliver, J Osborne, MA Quail, MA Rajandream, J Rogers, S Rutter, K Seeger, J Skelton, R Squares, S Squares, JE Sulston, K Taylor, S Whitehead, BG Barrell
    posted to tb fatty-acid desa by JeremyZucker on 2008-08-09 06:41:23 as ** along with 3 people dkanter madhadron viktor21614
  • notes Crystal structure of the Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III.
    The Journal of biological chemistry, Vol. 276, No. 23. (8 June 2001), pp. 20516-20522.
    by JN Scarsdale, G Kazanina, X He, KA Reynolds, HT Wright
    posted to tb fatty-acid desa by JeremyZucker on 2008-08-09 06:37:22 as **
  • notes Identification and substrate specificity of beta -ketoacyl (acyl carrier protein) synthase III (mtFabH) from Mycobacterium tuberculosis.
    The Journal of biological chemistry, Vol. 275, No. 36. (8 September 2000), pp. 28201-28207.
    by KH Choi, L Kremer, GS Besra, CO Rock
    posted to tb mycolic-acid fatty-acid by JeremyZucker on 2008-08-09 06:32:11 as **
  • Microbial type I fatty acid synthases (FAS): major players in a network of cellular FAS systems.
    Microbiology and molecular biology reviews : MMBR, Vol. 68, No. 3. (September 2004), pp. 501-517.
    by E Schweizer, J Hofmann
    posted to tb fatty-acid by JeremyZucker on 2008-08-09 06:27:36 as **
  • Purification and characterization of an unusually large fatty acid synthase from Mycobacterium tuberculosis var. bovis BCG.
    Archives of biochemistry and biophysics, Vol. 295, No. 2. (June 1992), pp. 318-326.
    by S Kikuchi, DL Rainwater, PE Kolattukudy
    posted to tb fatty-acid by JeremyZucker on 2008-08-09 06:26:13 as **
  • MetaPath Online: a web server implementation of the network expansion algorithm.
    Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007)
    by T Handorf, O Ebenhöh
    posted to symbolic-programming fba by JeremyZucker on 2008-08-08 21:35:17 as **
  • The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
    Science, Vol. 318, No. 5848. (12 October 2007), pp. 245-250.
    by Sabeeha S Merchant, Simon E Prochnik, Olivier Vallon, Elizabeth H Harris, Steven J Karpowicz, George B Witman, Astrid Terry, Asaf Salamov, Lillian K Fritz-Laylin, Laurence Marechal-Drouard, Wallace F Marshall, Liang-Hu Qu, David R Nelson, Anton A Sanderfoot, Martin H Spalding, Vladimir V Kapitonov, Qinghu Ren, Patrick Ferris, Erika Lindquist, Harris Shapiro, Susan M Lucas, Jane Grimwood, Jeremy Schmutz, Pierre Cardol, Heriberto Cerutti, Guillaume Chanfreau, Chun-Long Chen, Valerie Cognat, Martin T Croft, Rachel Dent, Susan Dutcher, Emilio Fernandez, Hideya Fukuzawa, David Gonzalez-Ballester, Diego Gonzalez-Halphen, Armin Hallmann, Marc Hanikenne, Michael Hippler, William Inwood, Kamel Jabbari, Ming Kalanon, Richard Kuras, Paul A Lefebvre, Stephane D Lemaire, Alexey V Lobanov, Martin Lohr, Andrea Manuell, Iris Meier, Laurens Mets, Maria Mittag, Telsa Mittelmeier, James V Moroney, Jeffrey Moseley, Carolyn Napoli, Aurora M Nedelcu, Krishna Niyogi, Sergey V Novoselov, Ian T Paulsen, Greg Pazour, Saul Purton, Jean-Philippe Ral, Diego M Riano-Pachon, Wayne Riekhof, Linda Rymarquis, Michael Schroda, David Stern, James Umen, Robert Willows, Nedra Wilson, Sara L Zimmer, Jens Allmer, Janneke Balk, Katerina Bisova, Chong-Jian Chen, Marek Elias, Karla Gendler, Charles Hauser, Mary R Lamb, Heidi Ledford, Joanne C Long, Jun Minagawa, Dudley M Page, Junmin Pan, Wirulda Pootakham, Sanja Roje, Annkatrin Rose, Eric Stahlberg, Aimee M Terauchi, Pinfen Yang, Steven Ball, Chris Bowler, Carol L Dieckmann, Vadim N Gladyshev, Pamela Green, Richard Jorgensen, Stephen Mayfield, Bernd Mueller-Roeber, Sathish Rajamani, Richard T Sayre, Peter Brokstein, Inna Dubchak, David Goodstein, Leila Hornick, Wayne Y Huang, Jinal Jhaveri, Yigong Luo, Diego Martinez, Wing C Ngau, Bobby Otillar, Alexander Poliakov, Aaron Porter, Lukasz Szajkowski, Gregory Werner, Kemin Zhou, Igor V Grigoriev, Daniel S Rokhsar, Arthur R Grossman
    posted to photosynthesis chlamy biofuel by JeremyZucker on 2008-08-08 21:17:59 as ** along with 5 people tharris operon dragonrez zwang dandaman
  • Engineering photosynthetic light capture: impacts on improved solar energy to biomass conversion
    Plant Biotechnology Journal, Vol. 5, No. 6. (November 2007), pp. 802-814.
    by Mussgnug, H Jan, Thomas-Hall, Skye, Rupprecht, Jens, Foo, Alexander, Klassen, Viktor, Mcdowall, Alasdair, Schenk, M Peer, Kruse, Olaf, Hankamer, Ben
    posted to solar-power solar-energy photosynthesis by JeremyZucker on 2008-08-08 21:06:02 as **
  • Powering the planet: Chemical challenges in solar energy utilization
    PNAS, Vol. 103, No. 43. (24 October 2006), pp. 15729-15735.
    by Nathan S Lewis, Daniel G Nocera
    posted to solar-power solar-energy photosynthesis by JeremyZucker on 2008-08-01 10:08:44 as ** along with 2 people jwm mc2039
  • Hydrogen production by molecular photocatalysis.
    Chemical reviews, Vol. 107, No. 10. (October 2007), pp. 4022-4047.
    by AJ Esswein, DG Nocera
    posted to solar-power solar-energy photosynthesis by JeremyZucker on 2008-08-01 10:07:12 as **
  • Great challenges ahead.
    ChemSusChem, Vol. 1, No. 1-2. (2008)
    by DG Nocera
    posted to solar-energy by JeremyZucker on 2008-08-01 10:06:32 as **
  • In Situ Formation of an Oxygen-Evolving Catalyst in Neutral Water Containing Phosphate and Co2+ -- Kanan and Nocera, 10.1126/science.1162018 -- Science
    Science Express (31 July 2008)
    by Matthew W Kanan, Daniel G Nocera
    posted to solar-power solar-energy photosynthesis by JeremyZucker on 2008-08-01 10:06:00 as **
  • Biopathways representation and simulation on hybrid functional Petri net.
    In silico biology, Vol. 3, No. 3. (2003), pp. 389-404.
    by H Matsuno, Y Tanaka, H Aoshima, A Doi, M Matsui, S Miyano
    posted to petri-net biopax by JeremyZucker on 2008-07-31 20:14:49 as **
  • A versatile petri net based architecture for modeling and simulation of complex biological processes.
    Genome informatics. International Conference on Genome Informatics, Vol. 15, No. 1. (2004), pp. 180-197.
    by M Nagasaki, A Doi, H Matsuno, S Miyano
    posted to petri-net biopax by JeremyZucker on 2008-07-31 20:14:22 as **
  • Systematic reconstruction of TRANSPATH data into Cell System Markup Language
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Masao Nagasaki, Ayumu Saito, Chen Li, Euna Jeong, Satoru Miyano
    posted to biopax by JeremyZucker on 2008-07-31 20:13:56 as ** along with 2 people bootsy reyez
  • Conversion from BioPAX to CSO for system dynamics and visualization of biological pathway.
    Genome informatics. International Conference on Genome Informatics, Vol. 18 (2007), pp. 225-236.
    by E Jeong, M Nagasaki, S Miyano
    posted to no-tag by JeremyZucker on 2008-07-31 20:13:30 as **
  • An efficient grid layout algorithm for biological networks utilizing various biological attributes
    BMC Bioinformatics, Vol. 8 (06 March 2007), 76.
    by Kaname Kojima, Masao Nagasaki, Euna Jeong, Mitsuru Kato, Satoru Miyano
    posted to graph-layout biopax by JeremyZucker on 2008-07-31 20:09:21 as **
  • Parameters affecting the chemical work output of a hybrid photoelectrochemical biofuel cell.
    Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology, Vol. 6, No. 4. (April 2007), pp. 431-437.
    by M Hambourger, PA Liddell, D Gust, AL Moore, TA Moore
    posted to solar-energy photosynthesis biofuel-cell biofuel by JeremyZucker on 2008-07-30 18:33:00 as **
  • Enzyme-Based Photoelectrochemical Biofuel Cell
    J. Phys. Chem. B, Vol. 107, No. 37. (18 September 2003), pp. 10252-10260.
    by L Delagarza, G Jeong, PA Liddell, T Sotomura, TA Moore, AL Moore, D Gust
    posted to solar-power photosynthesis biofuel by JeremyZucker on 2008-07-30 18:31:55 as **
  • Porphyrin-Sensitized Nanoparticulate TiO2 as the Photoanode of a Hybrid Photoelectrochemical Biofuel Cell
    Langmuir, Vol. 20, No. 19. (14 September 2004), pp. 8366-8371.
    by A Brune, G Jeong, PA Liddell, T Sotomura, TA Moore, AL Moore, D Gust
    posted to solar-power photosynthesis biofuel by JeremyZucker on 2008-07-30 02:34:30 as **
  • Predicting biological system objectives de novo from internal state measurements.
    BMC bioinformatics, Vol. 9 (2008)
    by EP Gianchandani, MA Oberhardt, AP Burgard, CD Maranas, JA Papin
    posted to objective-functions fba by JeremyZucker on 2008-07-26 10:48:19 as **
  • The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks.
    Eur J Biochem, Vol. 271, No. 14. (July 2004), pp. 2905-2922.
    by HG Holzhütter
    posted to stationarity flux-measurements fba by JeremyZucker on 2008-07-26 10:44:08 as ** along with 3 people and 1 group sobolevnrm pmendes alexg baker-group
  • Duality, Thermodynamics, and the Linear Programming Problem in Constraint-Based Models of Metabolism
    Physical Review Letters, Vol. 99, No. 10. (2007)
    by Patrick B Warren, Janette L Jones
    posted to thermodynamics gibbs-energy fba by JeremyZucker on 2008-07-25 21:02:40 as ** along with 1 person elm
  • A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient
    BMC Bioinformatics, Vol. 8 (30 October 2007), 421.
    by Francisco Llaneras, Jesus Pico
    posted to uncertainty mfa metabolite-concentrations flux-measurements by JeremyZucker on 2008-07-25 20:28:59 as **
  • Robust detection and verification of linear relationships to generate metabolic networks using estimates of technical errors
    BMC Bioinformatics, Vol. 8 (21 May 2007), 162.
    by Frank Kose, Jan Budzies, Matthias Holschneider, Oliver Fiehn
    posted to metabolome metabolite-concentrations metabolic-reconstruction metabolic-models by JeremyZucker on 2008-07-25 18:51:54 as ** along with 2 people jhatrimatri shigepong
  • Metabolic profiles to define the genome: can we hear the phenotypes?
    Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 359, No. 1446. (29 June 2004), pp. 857-871.
    by JL Griffin
    posted to metabolomics metabolite-concentrations by JeremyZucker on 2008-07-25 18:49:58 as **
  • Closed-loop, multiobjective optimization of two-dimensional gas chromatography/mass spectrometry for serum metabolomics.
    Analytical chemistry, Vol. 79, No. 2. (15 January 2007), pp. 464-476.
    by S O'Hagan, WB Dunn, JD Knowles, D Broadhurst, R Williams, JJ Ashworth, M Cameron, DB Kell
    posted to metabolomics metabolite-concentrations gc-gc-ms by JeremyZucker on 2008-07-25 17:14:43 as **
  • Closed-Loop, Multiobjective Optimization of Analytical Instrumentation: Gas Chromatography/Time-of-Flight Mass Spectrometry of the Metabolomes of Human Serum and of Yeast Fermentations
    Anal. Chem., Vol. 77, No. 1. (1 January 2005), pp. 290-303.
    by S O'Hagan, WB Dunn, M Brown, JD Knowles, DB Kell
    posted to yeast metabolomics metabolite-concentrations gc-tof-ms gc-ms by JeremyZucker on 2008-07-25 17:13:32 as **
  • Proposed minimum reporting standards for data analysis in metabolomics
    Metabolomics, Vol. 3, No. 3. (2007), pp. 231-241.
    by Royston Goodacre, David Broadhurst, Age Smilde, Bruce Kristal, J Baker, Richard Beger, Conrad Bessant, Susan Connor, Giorgio Capuani, Andrew Craig, Tim Ebbels, Douglas Kell, Cesare Manetti, Jack Newton, Giovanni Paternostro, Ray Somorjai, Michael Sjöström, Johan Trygg, Florian Wulfert
    posted to metabolomics by JeremyZucker on 2008-07-25 17:09:57 as **
  • Emerging bioinformatics for the metabolome.
    Brief Bioinform, Vol. 3, No. 2. (June 2002), pp. 134-145.
    by P Mendes
    posted to metabolomics metabolite-concentrations by JeremyZucker on 2008-07-25 17:07:24 as ** along with 3 people and 1 group irenas pmendes katerinakal dbk-lab
  • Visualizing plant metabolomic correlation networks using clique-metabolite matrices.
    Bioinformatics (Oxford, England), Vol. 17, No. 12. (December 2001), pp. 1198-1208.
    by F Kose, W Weckwerth, T Linke, O Fiehn
    posted to metabolome metabolite-concentrations by JeremyZucker on 2008-07-25 17:06:53 as **
  • Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era.
    Bioessays, Vol. 26, No. 1. (January 2004), pp. 99-105.
    by DB Kell, SG Oliver
    posted to robot-scientist by JeremyZucker on 2008-07-25 17:05:07 as ** along with 5 people and 3 groups Zephyrus dbk chad_davis dullhunk fisherp Roswell Cancer Crosstalk streptomyces dbk-lab
  • A family of autocrine growth factors in <i> Mycobacterium tuberculosis</i>
    Molecular Microbiology, Vol. 46, No. 3. (2002), pp. 623-635.
    by Galina V Mukamolova, Obolbek A Turapov, Danielle I Young, Arseny S Kaprelyants, Douglas B Kell, Michael Young
    posted to tb by JeremyZucker on 2008-07-25 17:04:09 as **
  • Metabolomics and systems biology: making sense of the soup.
    Curr Opin Microbiol, Vol. 7, No. 3. (June 2004), pp. 296-307.
    by DB Kell
    posted to metabolomics metabolite-concentrations by JeremyZucker on 2008-07-25 17:03:04 as ** along with 12 people and 2 groups camster snuppepuppan dbk irenas BragilMassoud betainverse rmj001 ssaw kuhn wnpx daniel_schober jrbanga streptomyces dbk-lab
  • Metabolomics by numbers: acquiring and understanding global metabolite data.
    Trends Biotechnol, Vol. 22, No. 5. (May 2004), pp. 245-252.
    by R Goodacre, S Vaidyanathan, WB Dunn, GG Harrigan, DB Kell
    posted to metabolomics metabolite-concentrations by JeremyZucker on 2008-07-25 17:00:26 as ** along with 8 people and 2 groups dbk irenas betainverse kuhn frohike daniel_schober drsandrug katerinakal streptomyces dbk-lab
  • A metabolome pipeline: from concept to data to knowledge
    Metabolomics, Vol. 1, No. 1. (March 2005), pp. 39-51.
    by Marie Brown, Warwick B Dunn, David I Ellis, Royston Goodacre, Julia Handl, Joshua D Knowles, Steve Oâhagan, Irena Spasiä, Douglas B Kell
    posted to metabolomics metabolite-concentrations by JeremyZucker on 2008-07-25 16:58:20 as ** along with 3 people and 1 group irenas andytseng egonw dbk-lab
  • Thermodynamics-Based Metabolic Flux Analysis
    Biophys. J., Vol. 92, No. 5. (1 March 2007), pp. 1792-1805.
    by Christopher S Henry, Linda J Broadbelt, Vassily Hatzimanikatis
    posted to thermodynamics mfa fba by JeremyZucker on 2008-07-25 10:30:19 as ** along with 1 person lylu
  • Flux balance analysis in the era of metabolomics
    Brief Bioinform, Vol. 7, No. 2. (1 June 2006), pp. 140-150.
    by Jong M Lee, Erwin P Gianchandani, Jason A Papin
    posted to metabolomics fba by JeremyZucker on 2008-07-25 10:28:53 as ** along with 1 person edwardmorrissey
  • Metabolomics, machine learning and modelling: towards an understanding of the language of cells.
    Biochemical Society transactions, Vol. 33, No. Pt 3. (June 2005), pp. 520-524.
    by DB Kell
    posted to metabolomics metabolite-concentrations debugging-the-bug by JeremyZucker on 2008-07-25 09:55:15 as ** along with 1 person Borelli
  • Metabolic isotopomer labeling systems. Part I: global dynamic behavior.
    Mathematical biosciences, Vol. 169, No. 2. (February 2001), pp. 173-205.
    by W Wiechert, M Wurzel
    posted to mfa flux-measurements 13c by JeremyZucker on 2008-07-25 09:12:26 as **
  • Metabolic isotopomer labeling systems. Part II: structural flux identifiability analysis.
    Mathematical biosciences, Vol. 183, No. 2. (June 2003), pp. 175-214.
    by N Isermann, W Wiechert
    posted to mfa flux-measurements 13c by JeremyZucker on 2008-07-25 09:11:46 as **
  • Bidirectional reaction steps in metabolic networks: IV. Optimal design of isotopomer labeling experiments.
    Biotechnology and bioengineering, Vol. 66, No. 2. (1999), pp. 86-103.
    by M Möllney, W Wiechert, D Kownatzki, AA de Graaf
    posted to mfa flux-measurements 13c by JeremyZucker on 2008-07-25 09:09:32 as **
  • Bidirectional reaction steps in metabolic networks: III. Explicit solution and analysis of isotopomer labeling systems.
    Biotechnology and bioengineering, Vol. 66, No. 2. (1999), pp. 69-85.
    by W Wiechert, M Möllney, N Isermann, M Wurzel, AA de Graaf
    posted to mfa flux-measurements 13c by JeremyZucker on 2008-07-25 09:08:51 as **
  • Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions.
    Metabolic engineering, Vol. 9, No. 1. (January 2007), pp. 68-86.
    by MR Antoniewicz, JK Kelleher, G Stephanopoulos
    posted to mfa flux-measurements emu 13c by JeremyZucker on 2008-07-25 09:07:29 as **
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