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de alhufton library [107 articles]

Articles dernièrement stockés dans la bibliothèque de alhufton .
  • Comparison of Pax1/9 Locus Reveals 500-Myr-Old Syntenic Block and Evolutionary Conserved Noncoding Regions
    Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 784-791.
    by Wang, Wei, Zhong, Jing, Su, Bing, Zhou, Yan, Wang, Yi-Quan
    posted to pax conserved_noncoding by alhufton on 2008-09-01 16:44:28 as ** along with 1 person maximilianh
  • Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Genome Res. (26 June 2008), gr.077131.108.
    by Alisha Holloway, David Begun, Adam Siepel, Katherine Pollard
    posted to tfbs drosophila conserved_noncoding by alhufton on 2008-09-01 14:33:46 as ** along with 3 people and 2 groups cisevol maximilianh bpcusack cis-regulatory-evolution BergmanLab
  • Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.
    Nature methods (17 August 2008)
    by Anton Valouev, David S S Johnson, Andreas Sundquist, Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M M Myers, Arend Sidow
    posted to chip-seq tfbs by alhufton on 2008-09-01 09:48:41 as ** along with 7 people gdb megraw kengg jyuh kjglennie bryankr maximilianh
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to evolution primate promoter regulatory tfbs by alhufton on 2008-08-22 15:12:45 as ** along with 7 people and 2 groups djkt bpcusack aprasad pradiptaray caseybrown maximilianh cisevol BergmanLab cis-regulatory-evolution
  • The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes
    Proteome Science, Vol. 6 (11 August 2008), 22.
    by Karlheinz Mann, Albert J Poustka, Matthias Mann
    posted to proteome sea_urchin spine by alhufton on 2008-08-13 16:46:39 as **
  • Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes.
    Genomics, Vol. 91, No. 3. (March 2008), pp. 243-248.
    by P Michalak
    posted to genomic_function_clustering by alhufton on 2008-08-08 14:39:04 as ** along with 1 person kengg
  • Genomic Gene Clustering Analysis of Pathways in Eukaryotes
    Genome Res., Vol. 13, No. 5. (1 May 2003), pp. 875-882.
    by Jennifer M Lee, Erik L Sonnhammer
    posted to genomic_function_clustering by alhufton on 2008-08-08 14:38:21 as ** along with 4 people JeffR100 jpoyatos maximilianh Garamonfok
  • Expression of zebrafish pax6b in pancreas is regulated by two enhancers containing highly conserved cis-elements bound by PDX1, PBX and PREP factors
    BMC Developmental Biology, Vol. 8 (16 May 2008), 53.
    by Francois M Delporte, Vincent Pasque, Nathalie Devos, Isabelle Manfroid, Marianne L Voz, Patrick Motte, Frederic Biemar, Joseph A Martial, Bernard Peers
    posted to enhancers pax6 regulation by alhufton on 2008-08-04 11:17:57 as **
  • Evolution of Complex Modular Biological Networks.
    PLoS Comput Biol, Vol. 4, No. 2. (8 February 2008)
    by Arend Hintze, Christoph Adami
    posted to evolution metabolic networks simulation by alhufton on 2008-07-30 14:43:29 as ** along with 4 people grahamc laughcry rcaze phoenixzxl
  • Scaling of the BMP activation gradient in Xenopus embryos
    Nature, Vol. 453, No. 7199., pp. 1205-1211.
    by Danny Ben-Zvi, Ben-Zion Shilo, Abraham Fainsod, Naama Barkai
    posted to organizer systemsbiology xenopus by alhufton on 2008-07-25 17:01:31 as **
  • Axial patterning in cephalochordates and the evolution of the organizer
    Nature (21 January 2007)
    by Jr-Kai Yu, Yutaka Satou, Nicholas D Holland, Tadasu Shin-I, Yuji Kohara, Noriyuki Satoh, Marianne Bronner-Fraser, Linda Z Holland
    posted to evolution organizer by alhufton on 2008-07-25 16:55:59 as ** along with 1 person cmzmasek
  • A gene regulatory network orchestrates neural crest formation
    Nat Rev Mol Cell Biol, Vol. 9, No. 7. (July 2008), pp. 557-568.
    by Tatjana Sauka-Spengler, Marianne Bronner-Fraser
    posted to development neuralcrest regulation by alhufton on 2008-07-23 10:26:06 as ** along with 1 person fpattyn
  • Expression patterns of plexins and neuropilins are consistent with cooperative and separate functions during neural development
    BMC Developmental Biology, Vol. 6 (17 July 2006), 32.
    by Olivier Mauti, Rejina Sadhu, Joelle Gemayel, Matthias Gesemann, Esther T Stoeckli
    posted to expression-note insitu neuropilins plexins by alhufton on 2008-07-23 09:47:19 as **
  • Consequences of genome duplication
    Current Opinion in Genetics & Development, Vol. 17, No. 6. (December 2007), pp. 505-512.
    by Marie Semon, Kenneth H Wolfe
    posted to duplication by alhufton on 2008-07-22 11:47:48 as ** along with 3 people dchughes echinotrix dandaman
  • Genome evolution and speciation genetics of clawed frogs (Xenopus and Silurana).
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 4687-4706.
    by BJ Evans
    posted to duplication frogs speciation by alhufton on 2008-07-22 11:46:23 as read along with 1 person and 1 group stajich Berkeley Mycology
  • EXPLOSIVE EVOLUTIONARY RADIATIONS: DECREASING SPECIATION OR INCREASING EXTINCTION THROUGH TIME?
    Evolution; international journal of organic evolution (11 June 2008)
    by Daniel L L Rabosky, Irby J J Lovette
    posted to evolution speciation by alhufton on 2008-07-22 11:36:15 as ** along with 1 person bpcusack
  • Plant species radiations: where, when, why?
    Philosophical transactions of the Royal Society of London. Series B, Biological sciences (25 June 2008)
    by Hans Peter P Linder
    posted to plantevolution speciation by alhufton on 2008-07-22 11:34:46 as ** along with 1 person madhadron
  • Local and cis effects of the H element on expression of odorant receptor genes in mouse.
    Cell, Vol. 130, No. 2. (27 July 2007), pp. 373-384.
    by SH Fuss, M Omura, P Mombaerts
    posted to enhancer knockout mouse olfactory regulation by alhufton on 2008-07-21 10:10:17 as read along with 1 person mdimon
  • Interchromosomal Interactions and Olfactory Receptor Choice
    Cell, Vol. 126, No. 2. (28 July 2006), pp. 403-413.
    by Stavros Lomvardas, Gilad Barnea, David J Pisapia, Monica Mendelsohn, Jennifer Kirkland, Richard Axel
    posted to enhancer olfactory regulation by alhufton on 2008-07-21 09:51:05 as ** along with 3 people margaritis maximilianh davfre
  • Genomic Evolution of the Placenta using Co-option and Duplication and Divergence.
    Genome Res (13 March 2008)
    by Kirstin Knox, Julie Baker
    posted to evolution newtissue placenta by alhufton on 2008-07-20 21:01:26 as ** along with 1 person grahamc
  • Genomic analysis of Xenopus organizer function
    BMC Developmental Biology, Vol. 6 (06 June 2006), 27.
    by Andrew L Hufton, Arunachalam Vinayagam, Sándor Suhai, Julie C Baker
    posted to microarray organizer xenopus by alhufton on 2008-07-19 20:45:32 as read
  • Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision.
    Trends in genetics : TIG, Vol. 20, No. 2. (February 2004), pp. 80-86.
    by D Graur, W Martin
    posted to evolution molecularclock by alhufton on 2008-07-18 14:45:41 as read along with 1 person bpcusack
  • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
    J Mol Biol, Vol. 314, No. 5. (Dec 2001), pp. 1041-1052.
    by M Remm, CE Storm, EL Sonnhammer
    posted to algorithms analysis animals automation biology caenorhabditis cells cluster computational databases drosophila elegans eukaryotic evolution genetic genome genomics homology humans melanogaster molecular phylogeny proteins sequence software species specificity by alhufton on 2008-07-17 16:19:20 as read
  • notes Phylogenetic inference under the pure drift model
    Mol Biol Evol, Vol. 11, No. 6. (Nov 1994), pp. 949-60.
    by S Xu, WR Atchley, WM Fitch
    posted to animals decision frequency gene genetic humans models phylogeny theoretical trees by alhufton on 2008-07-17 16:19:19 as read
  • notes The zebrafish gene map defines ancestral vertebrate chromosomes
    Genome Res, Vol. 15, No. 9. (Sep 2005), pp. 1307-14.
    by IG Woods, C Wilson, B Friedlander, P Chang, DK Reyes, R Nix, PD Kelly, F Chu, JH Postlethwait, WS Talbot
    posted to animals chromosome chromosomesgenetics duplication evolution expressed gene genetic genetics humans karyotyping linkage mapping mutation polymorphism sequence tags tetraodontiformesclassificationgenetics vertebratesclassificationgenetics zebrafishclassificationgenetics by alhufton on 2008-07-17 16:19:19 as read
  • notes Yesterday's polyploids and the mystery of diploidization
    Nat Rev Genet, Vol. 2, No. 5. (May 2001), pp. 333-41.
    by KH Wolfe
    posted to animals cerevisiaegenetics diploidy duplication evolution frequency gene genes genetics genome humans molecular plant plantgenetics plantsgenetics polyploidy saccharomyces variation by alhufton on 2008-07-17 16:19:19 as read
  • notes Genome evolution in polyploids
    Plant Mol Biol, Vol. 42, No. 1. (Jan 2000), pp. 225-49.
    by JF Wendel
    posted to duplication evolution gene genes genetics genome molecular plant plantgenetics plantsgenetics polyploidy variation by alhufton on 2008-07-17 16:19:18 as read
  • notes Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates
    Proc Natl Acad Sci U S A, Vol. 101, No. 6. (Feb October 2004), pp. 1638-43.
    by K Vandepoele, W De Vos, JS Taylor, A Meyer, Y Van de Peer
    posted to acid amino animals data evolution fishesgenetics genome molecular sequence vertebratesgenetics by alhufton on 2008-07-17 16:19:18 as read
  • notes GRIMM: genome rearrangements web server
    Bioinformatics, Vol. 18, No. 3. (Mar 2002), pp. 492-3.
    by G Tesler
    posted to acid algorithms animals chromosomesgenetics databases evolution gene genome humans internet molecular nucleic ordergenetics rearrangementgenetics software species specificity by alhufton on 2008-07-17 16:19:18 as read
  • notes Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii
    Mol Phylogenet Evol, Vol. 32, No. 3. (Sep 2004), pp. 686-94.
    by PF Stadler, C Fried, SJ Prohaska, WJ Bailey, BY Misof, FH Ruddle, GP Wagner
    posted to analysis animals base cluster data dna duplication evolution gene genes hagfishesgenetics homeoboxgenetics molecular phylogeny primers sequence by alhufton on 2008-07-17 16:19:18 as read
  • notes Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution
    Proc Natl Acad Sci U S A, Vol. 92, No. 17. (Aug JanuaryMay 1995), pp. 7719-23.
    by K Song, P Lu, K Tang, TC Osborn
    posted to brassicageneticsphysiology crosses dna evolution fertility genetic genome mapping plant polyploidy probes restriction by alhufton on 2008-07-17 16:19:17 as read
  • notes Vertebrate genome evolution: a slow shuffle or a big bang?
    Bioessays, Vol. 21, No. 8. (Aug 1999), pp. 697-703.
    by NG Smith, R Knight, LD Hurst
    posted to animals duplication evolution family gene genetic genome human models multigene polyploidy vertebrates by alhufton on 2008-07-17 16:19:17 as read
  • notes Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution
    BMC Genomics, Vol. 7 (2006)
    by JJ Smith, SR Voss
    posted to acid ambystomagenetics animal animals chickensgenetics chromosome chromosomes dogs evolution frequency gene genetic genetics homology humans linkage mapping mice models molecular nucleic order phylogeny rats sequence speciation synteny vertebratesgenetics zebrafishgenetics by alhufton on 2008-07-17 16:19:17 as read
  • notes Yeast genome evolution in the post-genome era
    Curr Opin Microbiol, Vol. 2, No. 5. (Oct 1999), pp. 548-54.
    by C Seoighe, KH Wolfe
    posted to cerevisiaegenetics duplicate evolution expression fungal gene genes genome introns molecular proteome saccharomyces by alhufton on 2008-07-17 16:19:17 as read
  • notes Updated map of duplicated regions in the yeast genome
    Gene, Vol. 238, No. 1. (Sep March0 1999), pp. 253-61.
    by C Seoighe, KH Wolfe
    posted to cerevisiaegenetics chromosomes duplication fungal gene genome kluyveromycesgenetics saccharomyces by alhufton on 2008-07-17 16:19:17 as read
  • notes Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor
    Trends Genet, Vol. 23, No. 3. (Mar 2007), pp. 108-12.
    by M Semon, KH Wolfe
    posted to animals deletion duplication gene genome humans tetraodontiformesgenetics zebrafishgenetics by alhufton on 2008-07-17 16:19:17 as read
  • notes Rearrangement rate following the whole-genome duplication in teleosts
    Mol Biol Evol, Vol. 24, No. 3. (Mar 2007), pp. 860-7.
    by M Semon, KH Wolfe
    posted to animals biology computational evolution fishesgenetics gene genomegenetics genomic instabilitygenetics molecular phylogeny polyploidy rearrangementgenetics by alhufton on 2008-07-17 16:19:16 as read
  • notes Evolutionary origin and maintenance of coexpressed gene clusters in mammals
    Mol Biol Evol, Vol. 23, No. 9. (Sep 2006), pp. 1715-23.
    by M Semon, L Duret
    posted to analysis animals chromosomes cluster databases evolution expression family gene genetic genetics genome human humans mice molecular multigene order protein regulation selection transcription x y by alhufton on 2008-07-17 16:19:16 as read
  • notes TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
    Bioinformatics, Vol. 18, No. 3. (Mar 2002), pp. 502-4.
    by HA Schmidt, K Strimmer, M Vingron, A von Haeseler
    posted to algorithms analysismethodsstatistics computing data database databases functions genetic internet likelihood management mathematical methodologies molecular numerical phylogeny sequence software systems by alhufton on 2008-07-17 16:19:16 as read
  • notes Conserved segment identification
    J Comput Biol, Vol. 4, No. 4. (Winter 1997), pp. 559-65.
    by D Sankoff, V Ferretti, JH Nadeau
    posted to algorithms animals base chromosome conserved evolution humans mapping molecular sequence by alhufton on 2008-07-17 16:19:16 as read
  • notes Phylogenetic analysis using PHYLIP
    Methods Mol Biol, Vol. 132 (2000), pp. 243-58.
    by JD Retief
    posted to acid alignmentmethods amino animals base data database dna functions homology humans likelihood management molecular phylogeny sequence systems by alhufton on 2008-07-17 16:19:16 as read
  • Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
    J Mol Biol, Vol. 314, No. 5. (Dec JanuaryApril 2001), pp. 1041-52.
    by M Remm, CE Storm, EL Sonnhammer
    posted to algorithms analysis animals automationmethods biologymethods caenorhabditis cellsmetabolism cluster computational databases drosophila elegans elegansgenetics eukaryotic evolution genetic genome genomicsmethods homology humans melanogastergenetics molecular phylogeny proteinsgenetics sequence software species specificity by alhufton on 2008-07-17 16:19:16 as read
  • notes Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
    Science, Vol. 317, No. 5834. (Jul June 2007), pp. 86-94.
    by NH Putnam, M Srivastava, U Hellsten, B Dirks, J Chapman, A Salamov, A Terry, H Shapiro, E Lindquist, VV Kapitonov, J Jurka, G Genikhovich, IV Grigoriev, SM Lucas, RE Steele, JR Finnerty, U Technau, MQ Martindale, DS Rokhsar
    posted to adhesion analysis and anemonesgeneticsmetabolism animals cell dna evolution family genes genetics genome genomics human humans introns linkage metabolic molecular multigene musclesphysiology nervous networks pathways phylogeny physiology sea sequence signal synteny system transduction by alhufton on 2008-07-17 16:19:15 as read
  • The amphioxus genome and the evolution of the chordate karyotype
    Nature (2008)
    by N Putnam, M Blow, T Butts, D Ferrier, R Furlong, U Hellsten, E Shoguchi, A Terry, J Yu, Benito E Gutiérrez, I Dubchak, Garcia J Fernàndez, I Grigoriev, A Horton, P de Jong, V Kapitonov, Y Kohara, Y Kuroki, E Lindquist, S Lucas, K Osoegawa, L Pennacchio, Y Satou, Sauka T Spengler, J Schmutz, Sin, A Toyoda, H Wada, Gibson J Brown, Bronner M Fraser, A Fujiyama, L Holland, PW Holland, N Satoh, DS Rokhsar
    posted to no-tag by alhufton on 2008-07-17 16:19:15 as read
  • notes Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome
    Proc Natl Acad Sci U S A, Vol. 101, No. 52. (Dec FebruaryAugust 2004), pp. 18240-5.
    by O Pontes, N Neves, M Silva, MS Lewis, A Madlung, L Comai, W Viegas, CS Pikaard
    posted to 5s arabidopsisgeneticsmetabolism biological centromere chromosomesultrastructure evolution expression fluorescence gene genes genome hybridization in metaphase models molecular nucleolus organizer plant polyploidy region regulation ribosomal rna situ by alhufton on 2008-07-17 16:19:14 as read
  • notes Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution
    Proc Natl Acad Sci U S A, Vol. 100, No. 13. (Jun FebruaryApril 2003), pp. 7672-7.
    by P Pevzner, G Tesler
    posted to animals breakage chromosome chromosomesultrastructure evolution genetic genome human humans mapping mice models molecular by alhufton on 2008-07-17 16:19:14 as read
  • notes Timing and mechanism of ancient vertebrate genome duplications -- the adventure of a hypothesis
    Trends Genet, Vol. 21, No. 10. (Oct 2005), pp. 559-67.
    by G Panopoulou, AJ Poustka
    posted to animals evolution genes genetic genome homeoboxgenetics models molecular phylogeny polyploidy vertebratesgenetics by alhufton on 2008-07-17 16:19:14 as read
  • notes New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes
    Genome Res, Vol. 13, No. 6A. (Jun 2003), pp. 1056-66.
    by G Panopoulou, S Hennig, D Groth, A Krause, AJ Poustka, R Herwig, M Vingron, H Lehrach
    posted to animals chordata ciona comparative data duplication evolution familygenetics gene genes genome human intestinalisgenetics mice molecular multigene nonvertebrategenetics phylogeny sequence structuralgenetics study vertebratesgenetics by alhufton on 2008-07-17 16:19:14 as read
  • notes The evolutionary consequences of polyploidy
    Cell, Vol. 131, No. 3. (Nov February 2007), pp. 452-62.
    by SP Otto
    posted to no-tag by alhufton on 2008-07-17 16:19:14 as read
  • notes Tetraploidy and chromosomal instability are early events during cervical carcinogenesis
    Carcinogenesis, Vol. 27, No. 2. (Feb 2006), pp. 337-43.
    by AJ Olaharski, R Sotelo, Solorza G Luna, ME Gonsebatt, P Guzman, A Mohar, DA Eastmond
    posted to 17 3 adult aneuploidy cell cervical chromosomal chromosomes disease female fluorescence genetic human humans hybridization in instability neoplasmsgeneticsphysiopathology neoplasticgenetics pair polyploidy predisposition situ to transformation uterine by alhufton on 2008-07-17 16:19:13 as read
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