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de bluto library [156 articles]

Articles dernièrement stockés dans la bibliothèque de bluto .
  • A statistical toolbox for metagenomics: assessing functional diversity in microbial communities
    BMC Bioinformatics, Vol. 9 (23 January 2008), 34.
    by Patrick Schloss, Jo Handelsman
    posted to function-comparison by bluto on 2008-07-07 22:37:25 as ** along with 4 people and 3 groups mjetten alexisfjdufresne jmeppley Thaverkamp microbiology_nijmegen anammox Microbial-Ecology
  • Genomic mapping by fingerprinting random clones: a mathematical analysis.
    Genomics, Vol. 2, No. 3. (April 1988), pp. 231-239.
    by ES Lander, MS Waterman
    posted to wgs coverage assembly by bluto on 2008-05-19 13:22:57 as ** along with 4 people and 1 group farhat ggrot RMGraze joshuashen Bioinformatics
  • Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.
    DNA Res, Vol. 14, No. 4. (31 August 2007), pp. 169-181.
    by K Kurokawa, T Itoh, T Kuwahara, K Oshima, H Toh, A Toyoda, H Takami, H Morita, VK Sharma, TP Srivastava, TD Taylor, H Noguchi, H Mori, Y Ogura, DS Ehrlich, K Itoh, T Takagi, Y Sakaki, T Hayashi, M Hattori
    posted to metagenomics by bluto on 2008-05-09 11:18:18 as ** along with 5 people vrich jmeppley wenhan carpi melissa_wos
  • Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems
    Microbiology, Vol. 154, No. 2. (1 February 2008), pp. 347-359.
    by Philippe N Bertin, Claudine Medigue, Philippe Normand
    posted to metagenomics by bluto on 2008-05-09 11:15:05 as ** along with 3 people vrich operon Olaf_Ilzins
  • Metagenomics: Read length matters
    Appl. Environ. Microbiol. (11 January 2008), AEM.02181-07.
    by Eric K Wommack, Jaysheel Bhavsar, Jacques Ravel
    posted to metagenomics by bluto on 2008-05-09 11:12:51 as ** along with 8 people and 2 groups alexl alexisfjdufresne jmeppley azazello kinestetika Thaverkamp skato_toyaku rvgomes Microbial-Ecology microbiology_nijmegen
  • Microbial ecology of four coral atolls in the Northern Line Islands.
    PLoS ONE, Vol. 3, No. 2. (2008)
    by EA Dinsdale, O Pantos, S Smriga, RA Edwards, F Angly, L Wegley, M Hatay, D Hall, E Brown, M Haynes, L Krause, E Sala, SA Sandin, RV Thurber, BL Willis, F Azam, N Knowlton, F Rohwer
    posted to coral 454 by bluto on 2008-05-06 08:38:39 as read
  • notes Functional metagenomic profiling of nine biomes
    Nature (12 March 2008)
    by Elizabeth A Dinsdale, Robert A Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A Moran, Karen E Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R Brito, Yijun Ruan, Brandon K Swan, Rick Stevens, David L Valentine, Rebecca V Thurber, Linda Wegley, Bryan A White, Forest Rohwer
    posted to phage 454 by bluto on 2008-04-23 09:34:34 as ** along with 9 people and 3 groups oelemento vaulot vrich jmeppley alexisfjdufresne jyuh djkt neils kinestetika Papers recommended by the Roscoff Plankton Group Microbial-Ecology microbiology_nijmegen
  • Colourful coexistence of red and green picocyanobacteria in lakes and seas
    Ecology Letters, Vol. 10, No. 4. (April 2007), pp. 290-298.
    by Stomp, Maayke, Huisman, Jef, Voros, Lajos, Pick, R Frances, Laamanen, Maria, Haverkamp, Thomas, Stal, J Lucas
    posted to biodiversity synechococcus by bluto on 2008-03-15 21:32:29 as ** along with 1 person and 1 group Stenuite African_Lakes_Limnology
  • A photosynthetic alveolate closely related to apicomplexan parasites
    Nature, Vol. 451, No. 7181., pp. 959-963.
    by Robert B Moore, Miroslav Oborník, Jan Janouškovec, Tomáš Chrudimský, Marie Vancová, David H Green, Simon W Wright, Noel W Davies, Christopher JS Bolch, Kirsten Heimann, Jan Šlapeta, Ove Hoegh-Guldberg, John M Logsdon, Dee A Carter
    posted to photosynthesis by bluto on 2008-02-23 22:50:55 as **
  • Genome evolution in cyanobacteria: The stable core and the variable shell
    Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2510-2515.
    by Tuo Shi, Paul G Falkowski
    posted to evolution prochlorococcus synechococcus by bluto on 2008-02-23 22:44:00 as ** along with 4 people and 2 groups tuoshi vaulot operon Thaverkamp Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • The Native Bacterioplankton Community in the Central Baltic Sea Is Influenced by Freshwater Bacterial Species
    Appl. Environ. Microbiol., Vol. 74, No. 2. (15 January 2008), pp. 503-515.
    by L Riemann, C Leitet, T Pommier, K Simu, K Holmfeldt, U Larsson, A Hagstrom
    posted to metagenomic-project by bluto on 2008-02-14 09:07:29 as ** along with 1 person Thaverkamp
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to coevolution by bluto on 2008-02-06 16:35:04 as ** along with 12 people and 1 group paolomarcatili tmmurali brant balicea sebastien_vigneau cjeans aconesa Katje roys friendpine huali mdstobbe microbiology_nijmegen
  • Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations.
    PLoS Biol, Vol. 3, No. 5. (May 2005)
    by MB Sullivan, ML Coleman, P Weigele, F Rohwer, SW Chisholm
    posted to myo podo prochlorococcus synechococcus by bluto on 2008-01-31 15:40:31 as ** along with 1 person and 1 group Thaverkamp Microbial-Ecology
  • Population genomics in natural microbial communities
    Trends in Ecology & Evolution, Vol. 21, No. 9. (September 2006), pp. 508-516.
    by Rachel J Whitaker, Jillian F Banfield
    posted to biodiversity community-genomics by bluto on 2008-01-24 12:40:06 as ** along with 1 person jmeppley
  • Inference of population genetic parameters in metagenomics: A clean look at messy data
    Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1320-1327.
    by Philip L Johnson, Montgomery Slatkin
    posted to biodiversity metagenomics by bluto on 2008-01-23 16:34:52 as ** along with 1 person jmeppley
  • PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.
    BMC Bioinformatics, Vol. 6, No. 1. (2 March 2005)
    by F Angly, B Rodriguez-Brito, D Bangor, P McNairnie, M Breitbart, P Salamon, B Felts, J Nulton, J Mahaffy, F Rohwer
    posted to biodiversity lander-waterman by bluto on 2008-01-23 13:49:08 as ** along with 2 people knaseanka jmeppley
  • notes Genomic mapping by end-characterized random clones: a mathematical analysis
    Genomics, Vol. 26, No. 1. (1 March 1995), pp. 84-100.
    by Ethan Port, Fengzhu Sun, Daniela Martin, Michael S Waterman
    posted to lander-waterman by bluto on 2008-01-23 12:35:44 as **
  • Extension of Lander-Waterman theory for sequencing filtered DNA libraries
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Michael Wendl, Brad W Barbazuk
    posted to lander-waterman by bluto on 2008-01-23 11:52:13 as **
  • Gene flow reverses an adaptive cline in a coevolving host-parasitoid interaction.
    Am Nat, Vol. 169, No. 6. (June 2007), pp. 794-801.
    by SE Forde, JN Thompson, BJ Bohannan
    posted to coevolution phage-microbe-coevolution by bluto on 2008-01-21 12:06:27 as **
  • Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes
    Science (30 August 2007), 1142490.
    by Julie C Hotopp, Michael E Clark, Deodoro C Oliveira, Jeremy M Foster, Peter Fischer, Monica C Torres, Jonathan D Giebel, Nikhil Kumar, Nadeeza Ishmael, Shiliang Wang, Jessica Ingram, Rahul V Nene, Jessica Shepard, Jeffrey Tomkins, Stephen Richards, David J Spiro, Elodie Ghedin, Barton E Slatko, Herve Tettelin, John H Werren
    posted to lateral-transfer by bluto on 2008-01-17 17:34:36 as ** along with 7 people and 2 groups dpollard zwang emmahe lp2 wrowell paulschlesinger Patola EisenLab Cline_lab
  • Fine-scale phylogenetic architecture of a complex bacterial community.
    Nature, Vol. 430, No. 6999. (29 July 2004), pp. 551-554.
    by SG Acinas, V Klepac-Ceraj, DE Hunt, C Pharino, I Ceraj, DL Distel, MF Polz
    posted to marcelino by bluto on 2008-01-15 15:14:01 as ** along with 4 people mcox jmeppley Thaverkamp kerekesj
  • A novel method for accurate operon predictions in all sequenced prokaryotes
    Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. 880-892.
    by Morgan N Price, Katherine H Huang, Eric J Alm, Adam P Arkin
    posted to operon-prediction by bluto on 2007-12-31 21:29:10 as ** along with 1 person msuarezdiez
  • Operon prediction using both genome-specific and general genomic information
    Nucleic Acids Research, Vol. 35, No. 1. (January 2007), pp. 288-298.
    by Dam, Phuongan, Olman, Victor, Harris, Kyle, Su, Zhengchang, Xu, Ying
    posted to operon-prediction by bluto on 2007-12-31 21:26:54 as **
  • Genome-Wide Experimental Determination of Barriers to Horizontal Gene Transfer
    Science, Vol. 318, No. 5855. (30 November 2007), pp. 1449-1452.
    by Rotem Sorek, Yiwen Zhu, Christopher J Creevey, Pilar M Francino, Peer Bork, Edward M Rubin
    posted to hgt by bluto on 2007-12-24 08:12:04 as ** along with 6 people entropy madhadron operon djkt Katje emptyhb
  • Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
    Nature, Vol. 450, No. 7169., pp. 560-565.
    by Falk Warnecke, Peter Luginbühl, Natalia Ivanova, Majid Ghassemian, Toby H Richardson, Justin T Stege, Michelle Cayouette, Alice C Mchardy, Gordana Djordjevic, Nahla Aboushadi, Rotem Sorek, Susannah G Tringe, Mircea Podar, Hector G Martin, Victor Kunin, Daniel Dalevi, Julita Madejska, Edward Kirton, Darren Platt, Ernest Szeto, Asaf Salamov, Kerrie Barry, Natalia Mikhailova, Nikos C Kyrpides, Eric G Matson, Elizabeth A Ottesen, Xinning Zhang, Myriam Hernández, Catalina Murillo, Luis G Acosta, Isidore Rigoutsos, Giselle Tamayo, Brian D Green, Cathy Chang, Edward M Rubin, Eric J Mathur, Dan E Robertson, Philip Hugenholtz, Jared R Leadbetter
    posted to metagenomic-project by bluto on 2007-12-24 07:43:30 as ** along with 3 people azazello wenhan carpi
  • Metaproteomics: studying functional gene expression in microbial ecosystems.
    Trends Microbiol, Vol. 14, No. 2. (February 2006), pp. 92-97.
    by P Wilmes, PL Bond
    posted to metaproteomics by bluto on 2007-12-01 20:28:32 as ** along with 6 people mcox Yanno knaseanka jmeppley nitiniitk barberan
  • Big oil's biomass play
    Nature Biotechnology, Vol. 25, No. 11., pp. 1201-1203.
    by Cormac Sheridan
    posted to oil by bluto on 2007-11-20 10:16:01 as **
  • Outlook: Metagenomics and industrial applications
    Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 510-516.
    by Patrick Lorenz, Jurgen Eck
    posted to metagenomics by bluto on 2007-11-20 10:14:13 as ** along with 1 person Yanno
  • Impacts of biodiversity loss on ocean ecosystem services.
    Science, Vol. 314, No. 5800. (3 November 2006), pp. 787-790.
    by B Worm, EB Barbier, N Beaumont, JE Duffy, C Folke, BS Halpern, JB Jackson, HK Lotze, F Micheli, SR Palumbi, E Sala, KA Selkoe, JJ Stachowicz, R Watson
    posted to biodiversity by bluto on 2007-11-04 10:48:26 as ** along with 7 people and 3 groups brian Flit livingthingdan timothee GeeSharpMinor cfeurt zhangcaiyun biodiversity_conservation Global_biodiversity_model livingthing
  • Mining Biological Networks for Unknown Pathways.
    Bioinformatics (30 August 2007)
    by Ali Cakmak, Gultekin Ozsoyoglu
    posted to functionality-detection pathway-detection by bluto on 2007-11-04 10:45:05 as ** along with 7 people mdstobbe jyuh tmmurali shigepong cabbagezs idonaldson acakmak
  • Quantitative assessment of protein function prediction from metagenomics shotgun sequences
    Proceedings of the National Academy of Sciences, Vol. 104, No. 35. (28 August 2007), pp. 13913-13918.
    by ED Harrington, AH Singh, T Doerks, I Letunic, C von Mering, LJ Jensen, J Raes, P Bork
    posted to guilt-by-association function-comparison bork by bluto on 2007-10-31 07:11:04 as ** along with 2 people michC larsjuhljensen
  • notes Discovering local structure in gene expression data: the order-preserving submatrix problem
    (2002), pp. 49-57.
    by Amir Ben-Dor, Benny Chor, Richard Karp, Zohar Yakhini
    posted to local-structure-in-matrix microarray by bluto on 2007-10-30 09:09:01 as read
  • notes A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder.
    Science (6 September 2007)
    by Diana L L Cox-Foster, Sean Conlan, Edward C C Holmes, Gustavo Palacios, Jay D D Evans, Nancy A A Moran, Phenix-Lan L Quan, Thomas Briese, Mady Hornig, David M M Geiser, Vince Martinson, Dennis Vanengelsdorp, Abby L L Kalkstein, Andrew Drysdale, Jeffrey Hui, Junhui Zhai, Liwang Cui, Stephen K K Hutchison, Jan Fredrik F Simons, Michael Egholm, Jeffery S S Pettis, W Ian I Lipkin
    posted to metagenomic-project by bluto on 2007-10-26 10:39:22 as read along with 4 people and 1 group sconlan jmeppley carpi mellabee Bioinformatics
  • An application of statistics to comparative metagenomics.
    BMC Bioinformatics, Vol. 7, No. 1. (20 March 2006)
    by Beltran Rodriguez-Brito, Forest Rohwer, Robert Edwards
    posted to statistics metagenomics function-comparison by bluto on 2007-10-26 10:38:42 as ** along with 3 people carpi jmeppley knaseanka
  • A whole-genome assembly of Drosophila.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2196-2204.
    by EW Myers, GG Sutton, AL Delcher, IM Dew, DP Fasulo, MJ Flanigan, SA Kravitz, CM Mobarry, KH Reinert, KA Remington, EL Anson, RA Bolanos, HH Chou, CM Jordan, AL Halpern, S Lonardi, EM Beasley, RC Brandon, L Chen, PJ Dunn, Z Lai, Y Liang, DR Nusskern, M Zhan, Q Zhang, X Zheng, GM Rubin, MD Adams, JC Venter
    posted to assembly celera by bluto on 2007-10-22 10:49:11 as ** along with 4 people and 2 groups azazello wenhan tpreeprem yoanjacquemin MBLAB gatech-compgenomics
  • The Genome Sequence of Drosophila melanogaster
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2185-2195.
    by Mark D Adams, Susan E Celniker, Robert A Holt, Craig J Venter
    posted to assembly celera by bluto on 2007-10-22 10:00:09 as ** along with 7 people brant dragonrez RMGraze Chue treangen antonkratz mimulus_99
  • notes Phylogenetic identification and in situ detection of individual microbial cells without cultivation.
    Microbiol Rev, Vol. 59, No. 1. (March 1995), pp. 143-169.
    by RI Amann, W Ludwig, KH Schleifer
    posted to 16s microbial-diversity by bluto on 2007-10-21 13:44:21 as ** along with 3 people mcox knaseanka jmeppley
  • notes Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products.
    Chem Biol, Vol. 5, No. 10. (October 1998)
    by J Handelsman, MR Rondon, SF Brady, J Clardy, RM Goodman
    posted to functional-metagenomics metagenomics by bluto on 2007-10-21 13:06:29 as read along with 1 person jmeppley
  • notes Cloning the Soil Metagenome: a Strategy for Accessing the Genetic and Functional Diversity of Uncultured Microorganisms
    Appl. Environ. Microbiol., Vol. 66, No. 6. (1 June 2000), pp. 2541-2547.
    by Michelle R Rondon, Paul R August, Alan D Bettermann, Sean F Brady, Trudy H Grossman, Mark R Liles, Kara A Loiacono, Berkley A Lynch, Ian A Macneil, Charles Minor, Choi L Tiong, Michael Gilman, Marcia S Osburne, Jon Clardy, Jo Handelsman, Robert M Goodman
    posted to functional-metagenomics by bluto on 2007-10-21 11:41:09 as read along with 5 people mcox vrich jmeppley eweaver dmlai
  • notes Uncultured soil bacteria are a reservoir of new antibiotic resistance genes.
    Environ Microbiol, Vol. 6, No. 9. (September 2004), pp. 981-989.
    by CS Riesenfeld, RM Goodman, J Handelsman
    posted to functional-metagenomics by bluto on 2007-10-21 09:44:27 as read
  • Microbial diversity in the deep sea and the underexplored "rare biosphere"
    Proc Natl Acad Sci U S A (31 July 2006)
    by Mitchell L L Sogin, Hilary G G Morrison, Julie A A Huber, David Mark M Welch, Susan M M Huse, Phillip R R Neal, Jesus M M Arrieta, Gerhard J J Herndl
    posted to 454 metagenomic-project rarefaction by bluto on 2007-09-09 06:47:54 as read along with 8 people and 1 group mcox Olaf_Ilzins jmeppley balicea madhadron rabu xingxu kinestetika microbiology_nijmegen
  • notes Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species
    BMC Genomics, Vol. 7 (04 July 2006), 171.
    by Boris A Legault, Arantxa Lopez-Lopez, Jose C Alba-Casado, Ford, Henk Bolhuis, Francisco Rodriguez-Valera, Thane R Papke
    posted to metagenomics by bluto on 2007-08-19 09:43:34 as read
  • Genes from Nine Genomes Are Separated into Their Organisms in the Dinucleotide Composition Space
    DNA Res, Vol. 5, No. 5. (1 January 1998), pp. 251-259.
    by Hiroshi Nakashima, Motonori Ota, Ken Nishikawa, Tatsuo Ooi
    posted to binning by bluto on 2007-08-14 10:14:01 as ** along with 1 person karfunkel
  • notes Metagenomic analysis of the microbial community associated with the coral Porites astreoides
    Environmental Microbiology, Vol. 0, No. 0. (0000), pp. ???-???.
    by Linda Wegley, Robert Edwards, Beltran Rodriguez-Brito, Hong Liu, Forest Rohwer
    posted to metagenomic-project microbial-ecology by bluto on 2007-07-22 09:45:28 as read along with 1 person vrich
  • notes Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1404-1409.
    by R Sandberg, G Winberg, CI Bränden, A Kaske, I Ernberg, J Cöster
    posted to binning by bluto on 2007-06-19 14:27:38 as read along with 1 person karfunkel
  • Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
    Nat Methods (29 April 2007)
    by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, Harris Shapiro, Eugene Goltsman, Alice C C McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C C Kyrpides
    posted to binning metagenomics by bluto on 2007-06-19 14:15:47 as ** along with 8 people and 3 groups alexl mjetten carlk Yanno oamg jmeppley azazello GustavoLacerda microbiology_nijmegen Glimcher_Lab Bioinformatics
  • Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates
    Environmental Microbiology, Vol. 7, No. 10. (October 2005), pp. 1505-1513.
    by Gil Zeidner, Joseph P Bielawski, Michael Shmoish, David J Scanlan, Gazalah Sabehi, Oded Beja
    posted to myo photosynthesis podo prochlorococcus synechococcus by bluto on 2007-06-16 12:33:17 as ** along with 2 people and 1 group beatrizfernandez Thaverkamp Microbial-Ecology
  • Marine ecosystems: bacterial photosynthesis genes in a virus.
    Nature, Vol. 424, No. 6950. (14 August 2003)
    by NH Mann, A Cook, A Millard, S Bailey, M Clokie
    posted to myo phage photosynthesis podo by bluto on 2007-06-15 09:45:04 as **
  • GENSTYLE: exploration and analysis of DNA sequences with genomic signature.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by B Fertil, M Massin, S Lespinats, C Devic, P Dumee, A Giron
    posted to dna-separation by bluto on 2007-06-05 14:36:42 as ** along with 1 person operon
  • notes Genomic analysis of uncultured marine viral communities.
    Proc Natl Acad Sci U S A, Vol. 99, No. 22. (29 October 2002), pp. 14250-14255.
    by M Breitbart, P Salamon, B Andresen, JM Mahaffy, AM Segall, D Mead, F Azam, F Rohwer
    posted to biodiversity metagenomic-project by bluto on 2007-05-25 17:58:14 as read along with 3 people knaseanka jmeppley qlli
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