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de eoghanharr library [40 articles]

Articles dernièrement stockés dans la bibliothèque de eoghanharr .
  • Pathways of Carbon Assimilation and Ammonia Oxidation Suggested by Environmental Genomic Analyses of Marine Crenarchaeota
    PLoS Biology, Vol. 4, No. 4. (1 April 2006), e95.
    by Steven J Hallam, Tracy J Mincer, Christa Schleper, Christina M Preston, Katie Roberts, Paul M Richardson, Edward F Delong
    posted to metagenomics pathway sea by eoghanharr on 2006-12-12 15:45:40 as **
  • An analysis of the Sargasso Sea resource and the consequences for database composition.
    BMC Bioinformatics, Vol. 7 (2006)
    by ML Tress, D Cozzetto, A Tramontano, A Valencia
    posted to metagenomics sargasso by eoghanharr on 2006-11-02 16:59:58 as ** along with 4 people and 3 groups operon ana jmeppley Thaverkamp structural_bioinformatics Bioinformatics Microbial-Ecology
  • Errors in genome annotation.
    Trends Genet, Vol. 15, No. 4. (April 1999), pp. 132-133.
    by SE Brenner
    posted to no-tag by eoghanharr on 2006-11-02 16:57:29 as **
  • Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503.
    by Edward F Delong, Christina M Preston, Tracy Mincer, Virginia Rich, Steven J Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B Sullivan, Robert Edwards, Beltran R Brito, Sallie W Chisholm, David M Karl
    posted to community marine metagenomics by eoghanharr on 2006-11-02 10:00:22 as ** along with 9 people and 2 groups mjetten vrich mcox dayjm jmeppley michC bluto jdelcampo beatrizfernandez microbiology_nijmegen Microbial-Ecology
  • Genomics and evolution. Shotgun sequencing in the sea: a blast from the past?
    Science, Vol. 304, No. 5667. (2 April 2004), pp. 58-60.
    by PG Falkowski, C de Vargas
    posted to metagenomics sargasso by eoghanharr on 2006-11-02 09:59:20 as **
  • Environmental Genome Shotgun Sequencing of the Sargasso Sea
    Science, Vol. 304, No. 5667. (02 April 2004), pp. 66-74.
    by Craig C Venter, Karin Remington, John F Heidelberg, Aaron L Halpern, Doug Rusch, Jonathan A Eisen, Dongying Wu, Ian Paulsen, Karen E Nelson, William Nelson, Derrick E Fouts, Samuel Levy, Anthony H Knap, Michael W Lomas, Ken Nealson, Owen White, Jeremy Peterson, Jeff Hoffman, Rachel Parsons, Holly Baden-Tillson, Cynthia Pfannkoch, Yu-Hui Rogers, Hamilton O Smith
    posted to metagenomics sargasso by eoghanharr on 2006-11-02 09:56:52 as ** along with 15 people and 1 group pradiptaray vrich mcox knaseanka johanviklund bpb jmeppley balajis eweaver AaronDarling bluto jdelcampo azazello beatrizfernandez wenhan Microbial-Ecology
  • Overlapping genes as rare genomic markers: the phylogeny of [gamma]-Proteobacteria as a case study
    Trends in Genetics, Vol. 22, No. 11. (November 2006), pp. 593-596.
    by Yingqin Luo, Cong Fu, Da-Yong Zhang, Kui Lin
    posted to no-tag by eoghanharr on 2006-10-31 14:40:10 as **
  • Comparative Genome Analysis of the Neurexin Gene Family in Danio rerio: Insights into Their Functions and Evolution.
    Mol Biol Evol (13 October 2006)
    by Alberto Rissone, Matteo Monopoli, Monica Beltrame, Federico Bussolino, Franco Cotelli, Marco Arese
    posted to alternative_splicing evolution neurexin by eoghanharr on 2006-10-18 10:22:12 as ** along with 1 person niuniu6
  • NF-Ya activates multiple hematopoietic stem cell (HSC) regulatory genes and promotes HSC self-renewal.
    Proc Natl Acad Sci U S A, Vol. 102, No. 33. (16 August 2005), pp. 11728-11733.
    by J Zhu, Y Zhang, GJ Joe, R Pompetti, SG Emerson
    posted to alternative_splicing factor transcription by eoghanharr on 2006-10-04 09:50:17 as **
  • Comparative study of overlapping genes in the genomes of Mycoplasma genitalium and Mycoplasma pneumoniae
    Nucl. Acids Res., Vol. 27, No. 8. (15 April 1999), pp. 1847-1853.
    by Y Fukuda, T Washio, M Tomita
    posted to genes overlapping by eoghanharr on 2006-09-27 15:15:43 as ** along with 1 person operon
  • Properties of overlapping genes are conserved across microbial genomes
    Genome Res., Vol. 14, No. 11. (1 November 2004), pp. 2268-2272.
    by Zackary I Johnson, Sallie W Chisholm
    posted to genes overlapping by eoghanharr on 2006-09-27 15:13:28 as **
  • Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms
    PNAS, Vol. 103, No. 22. (30 May 2006), pp. 8390-8395.
    by Pedro R Romero, Saima Zaidi, Ya Y Fang, Vladimir N Uversky, Predrag Radivojac, Christopher J Oldfield, Marc S Cortese, Megan Sickmeier, Tanguy Legall, Zoran Obradovic, Keith A Dunker
    posted to as disorder evolution regulation by eoghanharr on 2006-09-20 14:53:09 as ** along with 2 people and 3 groups dchughes stajich G4ID Genetics-of-Gambling Berkeley Mycology
  • Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells
    Current Opinion in Cell Biology, Vol. 17, No. 3. (June 2005), pp. 309-315.
    by Fabrice Lejeune, Lynne E Maquat
    posted to mechanism nmd by eoghanharr on 2006-09-19 12:54:15 as **
  • Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons
    PNAS, Vol. 103, No. 36. (5 September 2006), pp. 13427-13432.
    by Xiang H Zhang, Lawrence A Chasin
    posted to alternative_splicing evolution by eoghanharr on 2006-09-08 12:34:34 as ** along with 4 people and 3 groups aprasad dayjm dchughes paulcartwright G4ID Genetics-of-Gambling BergmanLab
  • Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by P Flicek, MR Brent
    posted to alternative_splicing prediction by eoghanharr on 2006-08-30 15:34:24 as ** along with 1 person and 1 group wenhan Bioinformatics
  • Protein Molecular Function Prediction by Bayesian Phylogenomics.
    PLoS Comput Biol, Vol. 1, No. 5. (7 October 2005)
    by Barbara E E Engelhardt, Michael I I Jordan, Kathryn E E Muratore, Steven E E Brenner
    posted to phylogenomics by eoghanharr on 2006-08-22 09:56:46 as ** along with 7 people and 4 groups kentsis ana Einat dlr marcius sriram_s bootsy structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs.
    Nucleic Acids Res (12 August 2006)
    by Jun-Ichi I Takeda, Yutaka Suzuki, Mitsuteru Nakao, Roberto A A Barrero, Kanako O O Koyanagi, Lihua Jin, Chie Motono, Hiroko Hata, Takao Isogai, Keiichi Nagai, Tetsuji Otsuki, Vladimir Kuryshev, Masafumi Shionyu, Kei Yura, Mitiko Go, Jean Thierry-Mieg, Danielle Thierry-Mieg, Stefan Wiemann, Nobuo Nomura, Sumio Sugano, Takashi Gojobori, Tadashi Imanishi
    posted to alternative_splicing hinv by eoghanharr on 2006-08-21 14:00:26 as ** along with 1 person jfr
  • The types and prevalence of alternative splice forms
    Current Opinion in Structural Biology, Vol. 16, No. 3. (June 2006), pp. 362-367.
    by Mihaela Zavolan, Erik van Nimwegen
    posted to alternative_splicing by eoghanharr on 2006-08-21 13:56:12 as **
  • Comparative analysis identifies exonic splicing regulatory sequences-the complex definition of enhancers and silencers.
    Mol Cell, Vol. 22, No. 6. (23 June 2006), pp. 769-781.
    by A Goren, O Ram, M Amit, H Keren, G Lev-Maor, I Vig, T Pupko, G Ast
    posted to alternative_splicing motif regulation by eoghanharr on 2006-06-27 12:50:57 as ** along with 2 people and 2 groups dchughes smount G4ID Genetics-of-Gambling
  • Alternative splicing and RNA selection pressure — evolutionary consequences for eukaryotic genomes
    Nature Reviews Genetics, Vol. 7, No. 7. (13 June 2006), pp. 499-509.
    by Yi Xing, Christopher Lee
    posted to alternative_splicing review by eoghanharr on 2006-06-18 12:48:17 as ** along with 3 people and 2 groups pradiptaray jwestbrook paulcartwright King_Lab BergmanLab
  • Structure and evolution of neurexin genes: insight into the mechanism of alternative splicing.
    Genomics, Vol. 79, No. 6. (June 2002), pp. 849-859.
    by K Tabuchi, TC Südhof
    posted to alternative_splicing review by eoghanharr on 2006-06-18 12:45:15 as **
  • Pre-messenger RNA processing and its regulation: a genomic perspective.
    Cell Mol Life Sci, Vol. 63, No. 7-8. (April 2006), pp. 796-819.
    by M Soller
    posted to alternative_splicing review by eoghanharr on 2006-06-18 12:39:50 as **
  • An overview of insecticide resistance.
    Science, Vol. 298, No. 5591. (4 October 2002), pp. 96-97.
    by J Hemingway, L Field, J Vontas
    posted to malaria resistance by eoghanharr on 2006-04-07 13:15:33 as **
  • The genomics of insecticide resistance.
    Genome Biol, Vol. 4, No. 1. (2003)
    by JG Oakeshott, I Home, TD Sutherland, RJ Russell
    posted to malaria resistance by eoghanharr on 2006-04-07 13:14:40 as **
  • Selecting for Functional Alternative Splices in ESTs
    Genome Res., Vol. 12, No. 12. (1 December 2002), pp. 1837-1845.
    by Zhengyan Kan, David States, Warren Gish
    posted to alternative_splicing evolution by eoghanharr on 2006-03-15 08:41:20 as **
  • Low conservation of alternative splicing patterns in the human and mouse genomes.
    Hum Mol Genet, Vol. 12, No. 11. (1 June 2003), pp. 1313-1320.
    by RN Nurtdinov, II Artamonova, AA Mironov, MS Gelfand
    posted to alternative_splicing evolution by eoghanharr on 2006-03-15 08:30:31 as ** along with 1 person radek
  • Identification and analysis of alternative splicing events conserved in human and mouse
    PNAS, Vol. 102, No. 8. (22 February 2005), pp. 2850-2855.
    by Gene W Yeo, Eric Van Nostrand, Dirk Holste, Tomaso Poggio, Christopher B Burge
    posted to alternative_splicing evolution by eoghanharr on 2006-03-15 08:13:08 as ** along with 3 people and 1 group radek penka stajich Nie
  • Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes.
    Gene, Vol. 364 (30 December 2005), pp. 53-62.
    by H Nagasaki, M Arita, T Nishizawa, M Suwa, O Gotoh
    posted to no-tag by eoghanharr on 2006-03-14 17:29:01 as **
  • Evolutionarily conserved coupling of transcription and alternative splicing in the EPB41 (protein 4.1R) and EPB41L3 (protein 4.1B) genes.
    Genomics, Vol. 86, No. 6. (December 2005), pp. 701-707.
    by JS Tan, N Mohandas, JG Conboy
    posted to no-tag by eoghanharr on 2006-03-14 17:27:35 as **
  • Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.
    Genome Res (6 March 2006)
    by Dmitry B B Malko, Vsevolod J J Makeev, Andrey A A Mironov, Mikhail S S Gelfand
    posted to alternative_splicing evolution insects by eoghanharr on 2006-03-09 08:03:46 as ** along with 4 people and 4 groups marcius indigoviolet penka stajich EisenLab Nie BioinfoCIPF SGU-CIPF
  • Survey of Conserved Alternative Splicing Events of mRNAs Encoding SR Proteins in Land Plants.
    Mol Biol Evol (6 March 2006)
    by Kei Iida, Mitiko Go
    posted to alternative_splicing evolution plants by eoghanharr on 2006-03-08 15:53:40 as **
  • Patterns of intron gain and loss in fungi.
    PLoS Biol, Vol. 2, No. 12. (December 2004)
    by CB Nielsen, B Friedman, B Birren, CB Burge, JE Galagan
    posted to evolution intron by eoghanharr on 2006-02-27 13:13:35 as ** along with 3 people jwortman angieju seitentaisei
  • A haplotype map of the human genome.
    Nature, Vol. 437, No. 7063. (27 October 2005), pp. 1299-1320.
    by D Altshuler, LD Brooks, A Chakravarti, FS Collins, MJ Daly, P Donnelly,
    posted to haplotype by eoghanharr on 2006-02-27 08:33:46 as ** along with 11 people and 2 groups jermth Cortel textoris pcahan1 cgasa tabu adepace djkt vplagnol ramensky jjannink EisenLab PROPOSED_CGASA
  • Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences.
    Trends Genet, Vol. 19, No. 3. (March 2003), pp. 115-119.
    by FA Kondrashov, EV Koonin
    posted to alternative_splicing evolution intron by eoghanharr on 2006-02-27 07:49:05 as ** along with 1 person balicea
  • Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution.
    Curr Biol, Vol. 13, No. 17. (2 September 2003), pp. 1512-1517.
    by IB Rogozin, YI Wolf, AV Sorokin, BG Mirkin, EV Koonin
    posted to evolution intron by eoghanharr on 2006-02-24 10:13:57 as ** along with 1 person and 1 group cmm FAB-lab
  • The evolution of spliceosomal introns: patterns, puzzles and progress
    Nature Reviews Genetics, Vol. 7, No. 3., pp. 211-221.
    by Scott W Roy, Walter Gilbert
    posted to alternative_splicing evolution intron by eoghanharr on 2006-02-20 10:20:53 as ** along with 5 people jonsta247 zhlei tabu stajich byy
  • Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression
    Genes Dev., Vol. 20, No. 2. (15 January 2006), pp. 153-158.
    by Qun Pan, Arneet L Saltzman, Yoon K Kim, Christine Misquitta, Ofer Shai, Lynne E Maquat, Brendan J Frey, Benjamin J Blencowe
    posted to alternative_splicing microarray nmd by eoghanharr on 2006-02-06 16:14:42 as ** along with 3 people bertelsen ccots tabu
  • Protein coding potential of retroviruses and other transposable elements in vertebrate genomes.
    Nucleic Acids Res, Vol. 33, No. 3. (2005), pp. 946-954.
    by EM Zdobnov, M Campillos, ED Harrington, D Torrents, P Bork
    posted to evolution retro by eoghanharr on 2006-02-06 09:00:54 as **
  • The organization and evolution of the dipteran and hymenopteran Down syndrome cell adhesion molecule (Dscam) genes.
    RNA, Vol. 10, No. 10. (October 2004), pp. 1499-1506.
    by BR Graveley, A Kaur, D Gunning, SL Zipursky, L Rowen, JC Clemens
    posted to as evolution by eoghanharr on 2005-03-10 16:52:14 as **
  • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.
    Trends Genet, Vol. 21, No. 2. (February 2005), pp. 93-102.
    by JM Johnson, S Edwards, D Shoemaker, EE Schadt
    posted to array review tiling by eoghanharr on 2005-03-07 17:34:45 as ** along with 6 people and 3 groups greg briann cassj imouthesmp xico adepace spliceml EisenLab WetBiology
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