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de giovenko library [72 articles]

Articles dernièrement stockés dans la bibliothèque de giovenko .
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
    posted to next_generation_sequencing by giovenko on 2008-09-05 13:24:24 as ** along with 13 people jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
  • Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses
    Science (4 September 2008), 1164368.
    by Sian Jones, Xiaosong Zhang, Williams D Parsons, Jimmy C Lin, Rebecca J Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R Smith, Manuel Hidalgo, Steven D Leach, Alison P Klein, Elizabeth M Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R Eshleman, Scott E Kern, Ralph H Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E Velculescu, Kenneth W Kinzler
    posted to deep_sequencing_and_cancer by giovenko on 2008-09-05 11:47:25 as ** along with 1 person and 1 group songpku Roswell Cancer Crosstalk
  • An Integrated Genomic Analysis of Human Glioblastoma Multiforme
    Science (4 September 2008), 1164382.
    by Williams D Parsons, Sian Jones, Xiaosong Zhang, Jimmy C Lin, Rebecca J Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, I-Mei Siu, Gary L Gallia, Alessandro Olivi, Roger Mclendon, Ahmed B Rasheed, Stephen Keir, Tatiana Nikolskaya, Yuri Nikolsky, Dana A Busam, Hanna Tekleab, Luis A Diaz, James Hartigan, Doug R Smith, Robert L Strausberg, Suely K Marie, Sueli M Shinjo, Hai Yan, Gregory J Riggins, Darell D Bigner, Rachel Karchin, Nick Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E Velculescu, Kenneth W Kinzler
    posted to deep_sequencing_and_cancer by giovenko on 2008-09-05 11:46:56 as ** along with 2 people and 1 group aheilbut songpku Roswell Cancer Crosstalk
  • The impact of microRNAs on protein output
    Nature (30 July 2008)
    by Daehyun Baek, Judit Villã©n, Chanseok Shin, Fernando D Camargo, Steven P Gygi, David P Bartel
    posted to mirna by giovenko on 2008-09-05 10:17:37 as ** along with 10 people mtagaya megraw djkt brianb emptyhb erel10 maralena ajaymalik caizhiqiang gdb
  • Small RNAs: The seeds of silence
    Nature, Vol. 455, No. 7209. (03 September 2008), pp. 44-45.
    by Zissimos Mourelatos
    posted to mirna by giovenko on 2008-09-05 10:17:25 as ** along with 3 people reyez mtagaya megraw
  • A microRNA DNA methylation signature for human cancer metastasis.
    Proceedings of the National Academy of Sciences of the United States of America (3 September 2008)
    by Amaia Lujambio, George A A Calin, Alberto Villanueva, Santiago Ropero, Montserrat Sánchez-Céspedes, David Blanco, Luis M M Montuenga, Simona Rossi, Milena S S Nicoloso, William J J Faller, William M M Gallagher, Suzanne A A Eccles, Carlo M M Croce, Manel Esteller
    posted to mirna_and_cancer by giovenko on 2008-09-05 10:03:58 as **
  • Four miRNAs associated with aggressiveness of lymph node-negative, estrogen receptor-positive human breast cancer.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 35. (2 September 2008), pp. 13021-13026.
    by JA Foekens, AM Sieuwerts, M Smid, MP Look, V de Weerd, AW Boersma, JG Klijn, EA Wiemer, JW Martens
    posted to mirna_and_cancer breast_cancer by giovenko on 2008-09-04 09:36:15 as **
  • Analysis of serial measurements in medical research.
    BMJ (Clinical research ed.), Vol. 300, No. 6719. (27 January 1990), pp. 230-235.
    by JN Matthews, DG Altman, MJ Campbell, P Royston
    posted to statistics serial_data by giovenko on 2008-09-04 09:23:27 as **
  • Recent Evolutions of Multiple Sequence Alignment Algorithms
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123.
    by Cédric Notredame
    posted to sequence_alignment by giovenko on 2008-08-28 13:48:23 as ** along with 10 people and 2 groups mdimmic rvosa timflutre stajich zwang cabbagezs groepl yoanjacquemin marti smbe2008 Bioinformatics FAB-lab
  • Using expression profiling data to identify human microRNA targets
    Nat Meth, Vol. 4, No. 12. (December 2007), pp. 1045-1049.
    by Jim C Huang, Tomas Babak, Timothy W Corson, Gordon Chua, Sofia Khan, Brenda L Gallie, Timothy R Hughes, Benjamin J Blencowe, Brendan J Frey, Quaid D Morris
    posted to mirna mirna_targets by giovenko on 2008-07-23 10:05:58 as ** along with 10 people and 1 group jfr tmmurali cjeans lp2 capitall fpattyn Alexander_Kanitz megraw jyuh heliopais microRNA
  • Efficient targeted transcript discovery via array-based normalization of RACE libraries
    Nature Methods, Vol. 5, No. 7. (25 May 2008), pp. 629-635.
    by Sarah Djebali, Philipp Kapranov, Sylvain Foissac, Julien Lagarde, Alexandre Reymond, Catherine Ucla, Carine Wyss, Jorg Drenkow, Erica Dumais, Ryan R Murray, Chenwei Lin, David Szeto, France Denoeud, Miquel Calvo, Adam Frankish, Jennifer Harrow, Periklis Makrythanasis, Marc Vidal, Kourosh Salehi-Ashtiani, Stylianos E Antonarakis, Thomas R Gingeras, Roderic Guigó
    posted to race by giovenko on 2008-07-21 13:04:55 as **
  • Correlation test to assess low-level processing of high-density oligonucleotide microarray data.
    BMC Bioinformatics, Vol. 6 (2005)
    by A Ploner, LD Miller, P Hall, J Bergh, Y Pawitan
    posted to microarray normalization by giovenko on 2008-07-14 13:18:11 as ** along with 2 people jfr ghattem
  • MicroRNA and cancer: Current status and prospective.
    Int J Cancer (12 December 2006)
    by Wei Wu, Miao Sun, Gang-Ming M Zou, Jianjun Chen
    posted to mirna_and_cancer by giovenko on 2008-07-03 12:40:43 as ** along with 4 people jyuh jfr eckart_bindewald Garamonfok
  • Next-Generation DNA Sequencing Methods.
    Annual review of genomics and human genetics (19 June 2008)
    by Elaine R R Mardis
    posted to next_generation_sequencing by giovenko on 2008-06-29 08:42:48 as ** along with 3 people aheilbut reyez jyuh
  • The impact of next-generation sequencing technology on genetics
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Elaine R Mardis
    posted to next_generation_sequencing by giovenko on 2008-06-29 08:42:00 as ** along with 10 people and 2 groups jyuh dchughes djkt niallhaslam urgi zerojinx hpaces jlgreen cybaer1 druvus Green Lab iSEEM
  • MAQC papers over the cracks
    Nature Biotechnology, Vol. 25, No. 1., pp. 27-28.
    by Peng Liang
    posted to maqc by giovenko on 2008-06-21 11:04:06 as **
  • Reproducibility of microarray data: a further analysis of microarray quality control (MAQC)data
    BMC Bioinformatics, Vol. 8 (25 October 2007), 412.
    by James Chen, Huey-Miin Hsueh, Robert Delongchamp, Chien-Ju Lin, Chen-An Tsai
    posted to maqc by giovenko on 2008-06-21 11:03:47 as ** along with 5 people jfr shigepong GeeSharpMinor shikin jyuh
  • Systemic Endocrine Instigation of Indolent Tumor Growth Requires Osteopontin
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 994-1005.
    by Sandra S Mcallister, Ann M Gifford, Ashley L Greiner, Stephen P Kelleher, Matthew P Saelzler, Tan A Ince, Ferenc Reinhardt, Lyndsay N Harris, Bonnie L Hylander, Elizabeth A Repasky, Robert A Weinberg
    posted to cancer by giovenko on 2008-06-19 09:31:56 as **
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to go by giovenko on 2008-06-18 15:22:53 as ** along with 20 people and 2 groups djkt jyuh aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo cabbagesofdoom tmmurali renatomilani capitall marck rvosa bpcusack logics of knowledge FAB-lab
  • Unique microRNA molecular profiles in lung cancer diagnosis and prognosis.
    Cancer Cell, Vol. 9, No. 3. (March 2006), pp. 189-198.
    by N Yanaihara, N Caplen, E Bowman, M Seike, K Kumamoto, M Yi, RM Stephens, A Okamoto, J Yokota, T Tanaka, GA Calin, CG Liu, CM Croce, CC Harris
    posted to mirna by giovenko on 2008-06-14 14:46:46 as ** along with 3 people jfr mtagaya blackm0k
  • MicroRNA-Cancer Connection: The Beginning of a New Tale
    Cancer Res, Vol. 66, No. 15. (1 August 2006), pp. 7390-7394.
    by George A Calin, Carlo M Croce
    posted to mirna by giovenko on 2008-06-14 12:41:41 as ** along with 4 people and 2 groups frohike marcius tardigrade ealloza BioinfoCIPF SGU-CIPF
  • Expression of E1A in terminally differentiated muscle cells reactivates the cell cycle and suppresses tissue-specific genes by separable mechanisms.
    Molecular and cellular biology, Vol. 16, No. 10. (October 1996), pp. 5302-5312.
    by M Tiainen, D Spitkovsky, P Jansen-Dürr, A Sacchi, M Crescenzi
    posted to e1a by giovenko on 2008-06-14 11:21:42 as **
  • Np95 is regulated by E1A during mitotic reactivation of terminally differentiated cells and is essential for S phase entry
    J. Cell Biol., Vol. 157, No. 6. (10 June 2002), pp. 909-914.
    by Ian M Bonapace, Lucia Latella, Roberto Papait, Francesco Nicassio, Alessandra Sacco, Masahiro Muto, Marco Crescenzi, Pier P Di Fiore
    posted to e1a by giovenko on 2008-06-14 11:19:58 as ** along with 1 person helenamistry
  • A cancer-specific transcriptional signature in human neoplasia.
    The Journal of clinical investigation, Vol. 115, No. 11. (November 2005), pp. 3015-3025.
    by F Nicassio, F Bianchi, M Capra, M Vecchi, S Confalonieri, M Bianchi, D Pajalunga, M Crescenzi, IM Bonapace, PP Di Fiore
    posted to e1a by giovenko on 2008-06-14 11:19:30 as **
  • A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1401-1414.
    by P Landgraf, M Rusu, R Sheridan, A Sewer, N Iovino, A Aravin, S Pfeffer, A Rice, AO Kamphorst, M Landthaler, C Lin, ND Socci, L Hermida, V Fulci, S Chiaretti, R Foà, J Schliwka, U Fuchs, A Novosel, RU Müller, B Schermer, U Bissels, J Inman, Q Phan, M Chien, DB Weir, R Choksi, G De Vita, D Frezzetti, HI Trompeter, V Hornung, G Teng, G Hartmann, M Palkovits, R Di Lauro, P Wernet, G Macino, CE Rogler, JW Nagle, J Ju, FN Papavasiliou, T Benzing, P Lichter, W Tam, MJ Brownstein, A Bosio, A Borkhardt, JJ Russo, C Sander, M Zavolan, T Tuschl
    posted to mirna by giovenko on 2008-06-14 10:54:42 as ** along with 11 people and 2 groups jyuh jfr andersbj rahulthadani xiuminyan heliopais maralena delenca caseybrown yoonk gdb Bioinformatics microRNA
  • Tutorial in Biostatistics. Meta-analysis: formulating, evaluating, combining, and reporting by S-L. Normand, Statistics in Medicine, 18, 321-359 (1999)
    Statistics in Medicine, Vol. 19, No. 5. (2000), pp. 759-761.
    by Theo Stijnen
    posted to meta-analysis by giovenko on 2008-06-14 08:12:36 as **
  • PAGE: parametric analysis of gene set enrichment.
    BMC Bioinformatics, Vol. 6 (2005)
    by SY Kim, DJ Volsky
    posted to gsea by giovenko on 2008-06-04 08:53:22 as ** along with 5 people and 1 group ealloza jdiggans waghsk srp33 heliopais BioinfoCIPF
  • Discovering statistically significant pathways in expression profiling studies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549.
    by L Tian, SA Greenberg, SW Kong, J Altschuler, IS Kohane, PJ Park
    posted to gsea pathways by giovenko on 2008-06-04 08:44:16 as ** along with 7 people and 1 group dragonrez maryee ealloza frohike justescaped srp33 heliopais BioinfoCIPF
  • Pharmacogenomic predictor of sensitivity to preoperative chemotherapy with paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide in breast cancer.
    J Clin Oncol, Vol. 24, No. 26. (10 September 2006), pp. 4236-4244.
    by KR Hess, K Anderson, WF Symmans, V Valero, N Ibrahim, JA Mejia, D Booser, RL Theriault, AU Buzdar, PJ Dempsey, R Rouzier, N Sneige, JS Ross, T Vidaurre, HL Gómez, GN Hortobagyi, L Pusztai
    posted to breast cancer crkrs by giovenko on 2008-06-03 15:26:09 as ** along with 1 person jfr
  • Expression genomics in breast cancer research: microarrays at the crossroads of biology and medicine
    Breast Cancer Research, Vol. 9 (26 March 2007), 206.
    by Lance D Miller, Edison T Liu
    posted to breast crkrs microarray by giovenko on 2008-06-03 15:04:43 as ** along with 1 person jfr
  • MicroRNA expression profiling of human breast cancer identifies new markers of tumour subtype
    Genome Biology, Vol. 8 (08 October 2007), R214.
    by Cherie Blenkiron, Leonard D Goldstein, Natalie P Thorne, Inmaculada Spiteri, Suet-Feung Chin, Mark J Dunning, Nuno L Barbosa-Morais, Andrew E Teschendorff, Andrew R Green, Ian O Ellis, Simon Tavare, Carlos Caldas, Eric A Miska
    posted to cancer mirna by giovenko on 2008-05-30 17:14:03 as ** along with 3 people and 1 group jfr heliopais ealloza microRNA
  • MicroRNA expression and function in cancer.
    Trends Mol Med (27 October 2006)
    by Ramiro Garzon, Muller Fabbri, Amelia Cimmino, George A A Calin, Carlo M M Croce
    posted to cancer mirna by giovenko on 2008-05-30 17:11:57 as ** along with 5 people and 2 groups tardigrade dchughes mtagaya Garamonfok jayster4 G4ID Genetics-of-Gambling
  • MicroRNA expression profiles classify human cancers
    Nature, Vol. 435, No. 7043., pp. 834-838.
    by Jun Lu, Gad Getz, Eric A Miska, Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L Ebert, Raymond H Mak, Adolfo A Ferrando, James R Downing, Tyler Jacks, Robert R Horvitz, Todd R Golub
    posted to cancer mirna by giovenko on 2008-05-30 17:10:32 as ** along with 11 people and 2 groups jfr tmmurali ajeffs tuck mtagaya ealloza frohike capitall maralena srp33 zhouyu Bioinformatics microRNA
  • Challenges in projecting clustering results across gene expression-profiling datasets.
    J Natl Cancer Inst, Vol. 99, No. 22. (21 November 2007), pp. 1715-1723.
    by L Lusa, LM McShane, JF Reid, L De Cecco, F Ambrogi, E Biganzoli, M Gariboldi, MA Pierotti
    posted to clustering subtypes by giovenko on 2008-05-30 09:52:20 as ** along with 3 people jyuh jfr laral
  • Are clusters found in one dataset present in another dataset?
    Biostatistics, Vol. 8, No. 1. (January 2007), pp. 9-31.
    by Kapp, V Amy, Tibshirani, Robert
    posted to clustering subtypes by giovenko on 2008-05-30 09:47:00 as **
  • SNP genotyping: six technologies that keyed a revolution
    Nature Methods, Vol. 5, No. 5., pp. 447-453.
    by Jeffrey Perkel
    posted to snp by giovenko on 2008-05-30 07:32:56 as ** along with 1 person jyuh
  • An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays
    Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1278-1285.
    by Naoaki Ono, Shingo Suzuki, Chikara Furusawa, Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu, Tetsuya Yomo
    posted to hybridization thermodynamics by giovenko on 2008-05-07 15:05:24 as ** along with 1 person waszak
  • A Note on the False Discovery Rate and Inconsistent Comparisons between Experiments.
    Bioinformatics (Oxford, England) (19 April 2008)
    by Roger Higdon, Gerald van V Belle, Eugene Kolker
    posted to fdr statistics by giovenko on 2008-05-07 15:02:59 as ** along with 6 people shigepong jyuh girschick wisdom_love renatomilani braynor
  • Normalization of oligonucleotide arrays based on the least-variant set of genes
    BMC Bioinformatics, Vol. 9 (05 March 2008), 140.
    by Stefano Calza, Davide Valentini, Yudi Pawitan
    posted to normalization by giovenko on 2008-05-06 14:01:22 as ** along with 4 people waszak jyuh jfr GeeSharpMinor
  • Rat toxicogenomic study reveals analytical consistency across microarray platforms
    Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1162-1169.
    by Lei Guo, Edward K Lobenhofer, Charles Wang, Richard Shippy, Stephen C Harris, Lu Zhang, Nan Mei, Tao Chen, Damir Herman, Federico M Goodsaid, Patrick Hurban, Kenneth L Phillips, Jun Xu, Xutao Deng, Yongming A Sun, Weida Tong, Yvonne P Dragan, Leming Shi
    posted to maqc by giovenko on 2008-05-06 08:37:01 as ** along with 3 people jfr jdiggans cberry
  • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    Nat Biotech, Vol. 24, No. 9. (2006), pp. 1151-1161.
    posted to maqc by giovenko on 2008-05-06 08:36:39 as ** along with 11 people kentsis jfr jdiggans qmwwallace cberry shigepong caseybrown shikin slevy03 jyuh vmsr
  • Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project
    Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1140-1150.
    by Tucker A Patterson, Edward K Lobenhofer, Stephanie B Fulmer-Smentek, Patrick J Collins, Tzu-Ming Chu, Wenjun Bao, Hong Fang, Ernest S Kawasaki, Janet Hager, Irina R Tikhonova, Stephen J Walker, Liang Zhang, Patrick Hurban, Francoise de Longueville, James C Fuscoe, Weida Tong, Leming Shi, Russell D Wolfinger
    posted to maqc by giovenko on 2008-05-06 08:36:17 as ** along with 3 people jfr cberry ghattem
  • Evaluation of external RNA controls for the assessment of microarray performance
    Nature Biotechnology, Vol. 24, No. 9. (09 August 2006), pp. 1132-1139.
    by Weida Tong, Anne B Lucas, Richard Shippy, Xiaohui Fan, Hong Fang, Huixiao Hong, Michael S Orr, Tzu-Ming Chu, Xu Guo, Patrick J Collins, Yongming A Sun, Sue-Jane Wang, Wenjun Bao, Russell D Wolfinger, Svetlana Shchegrova, Lei Guo, Janet A Warrington, Leming Shi
    posted to maqc by giovenko on 2008-05-06 08:35:55 as ** along with 2 people jfr cberry
  • Evaluation of DNA microarray results with quantitative gene expression platforms
    Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1115-1122.
    by Roger D Canales, Yuling Luo, James C Willey, Bradley Austermiller, Catalin C Barbacioru, Cecilie Boysen, Kathryn Hunkapiller, Roderick V Jensen, Charles R Knight, Kathleen Y Lee, Yunqing Ma, Botoul Maqsodi, Adam Papallo, Elizabeth H Peters, Karen Poulter, Patricia L Ruppel, Raymond R Samaha, Leming Shi, Wen Yang, Lu Zhang, Federico M Goodsaid
    posted to maqc by giovenko on 2008-05-06 08:35:34 as ** along with 4 people and 1 group jfr giovanni qmwwallace cberry GeschwindLab
  • Data quality in genomics and microarrays
    Nature Biotechnology, Vol. 24, No. 9., pp. 1112-1113.
    by Hanlee Ji, Ronald W Davis
    posted to maqc by giovenko on 2008-05-06 08:35:13 as ** along with 1 person cberry
  • A framework for the use of genomics data at the EPA
    Nature Biotechnology, Vol. 24, No. 9., pp. 1108-1111.
    by David J Dix, Kathryn Gallagher, William H Benson, Brenda L Groskinsky, Thomas J Mcclintock, Kerry L Dearfield, William H Farland
    posted to maqc by giovenko on 2008-05-06 08:34:54 as ** along with 1 person cberry
  • Impact of microarray data quality on genomic data submissions to the FDA
    Nature Biotechnology, Vol. 24, No. 9., pp. 1105-1107.
    by Felix W Frueh
    posted to maqc by giovenko on 2008-05-06 08:34:34 as ** along with 3 people and 1 group giovanni cberry jfr GeschwindLab
  • Empowering microarrays in the regulatory setting
    Nature Biotechnology, Vol. 24, No. 9., pp. 1103-1103.
    by Daniel A Casciano, Janet Woodcock
    posted to maqc by giovenko on 2008-05-06 08:33:31 as **
  • Making the most of microarrays
    Nat Biotech, Vol. 24, No. 9. (2006), pp. 1039-1039.
    posted to maqc by giovenko on 2008-05-06 08:32:59 as ** along with 2 people rdiaz cberry
  • Epigenetic gene silencing in cancer – a mechanism for early oncogenic pathway addiction?
    Nature Reviews Cancer, Vol. 6, No. 2., pp. 107-116.
    by Stephen B Baylin, Joyce E Ohm
    posted to cancer epigenetics by giovenko on 2008-05-05 14:27:14 as ** along with 1 person frohike
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