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de johncumbers binding [10 articles]

Recent papers added to de johncumbers library classified by the tag binding. You can also see everyone's binding.
  • Chromatin Opening and Stable Perturbation of Core Histone:DNA Contacts by FoxO1
    J. Biol. Chem., Vol. 282, No. 49. (7 December 2007), pp. 35583-35593.
    by Mitsutoki Hatta, Lisa A Cirillo
    posted to binding dna foxo by johncumbers on 2007-12-01 13:46:16 as **
  • Ranked prediction of p53 targets using hidden variable dynamic modeling
    Genome Biology, Vol. 7, No. 3. (2006)
    by Martino Barenco, Daniela Tomescu, Daniel Brewer, Robin Callard, Jaroslav Stark, Michael Hubank
    posted to binding p53 predictions sites by johncumbers on 2007-05-13 18:22:02 as ** along with 1 person ihpark
  • Connecting protein structure with predictions of regulatory sites.
    Proc Natl Acad Sci U S A (16 April 2007)
    by Alexandre V V Morozov, Eric D D Siggia
    posted to binding transcription by johncumbers on 2007-04-30 19:06:04 as ** along with 4 people and 2 groups ana aalibes kaarsinogen lusk structural_bioinformatics Bioinformatics
  • The JASPAR database
    posted to binding transcription by johncumbers on 2007-04-30 19:00:42 as **
  • Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation.
    Nat Genet (25 December 2005)
    by Seung Wook Oh, Arnab Mukhopadhyay, Bharat L L Dixit, Tamal Raha, Michael R R Green, Heidi A A Tissenbaum
    posted to aging binding foxo by johncumbers on 2006-08-14 04:41:57 as read along with 1 person tardigrade
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
    posted to binding computational prediction printed review site by johncumbers on 2006-07-16 18:53:41 as ***** along with 23 people and 6 groups nuin ep161302 icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
  • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    Journal of Molecular Biology, Vol. 281, No. 5. (4 September 1998), pp. 827-842.
    by J van Helden, B Andre, J Collado-Vides
    posted to binding motif murphy prediction site by johncumbers on 2006-07-16 18:34:37 as ***
  • Comparing genomic expression patterns across species identifies shared transcriptional profile in aging.
    Nat Genet, Vol. 36, No. 2. (February 2004), pp. 197-204.
    by SA McCarroll, CT Murphy, S Zou, SD Pletcher, CS Chin, YN Jan, C Kenyon, CI Bargmann, H Li
    posted to binding daf-16 printed by johncumbers on 2006-07-16 17:38:43 as **** along with 5 people jeremymiller pcahan1 tardigrade koller eukfn
  • A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles.
    Genome Res, Vol. 16, No. 3. (March 2006), pp. 405-413.
    by LW Chang, R Nagarajan, JA Magee, J Milbrandt, GD Stormo
    posted to binding foxo printed protocol by johncumbers on 2006-07-12 03:08:46 as *** along with 3 people ihpark jfr vega
  • Drosophila Transcription Factor Database
    posted to binding db foxo site tf by johncumbers on 2006-06-22 18:05:28 as **
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