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de kintoki library [49 articles]

Articles dernièrement stockés dans la bibliothèque de kintoki .
  • Structure of the human voltage-dependent anion channel.
    Proceedings of the National Academy of Sciences of the United States of America (1 October 2008)
    by Monika Bayrhuber, Thomas Meins, Michael Habeck, Stefan Becker, Karin Giller, Saskia Villinger, Clemens Vonrhein, Christian Griesinger, Markus Zweckstetter, Kornelius Zeth
    posted to eprots by kintoki on 2008-10-08 01:23:15 as ** along with 2 people agrossfield pansapiens
  • Genome-wide in situ exon capture for selective resequencing.
    Nat Genet (4 November 2007)
    by Emily Hodges, Zhenyu Xuan, Vivekanand Balija, Melissa Kramer, Michael N N Molla, Steven W W Smith, Christina M M Middle, Matthew J J Rodesch, Thomas J J Albert, Gregory J J Hannon, W Richard R McCombie
    posted to no-tag by kintoki on 2008-09-29 01:54:31 as ** along with 3 people giovanni jo_davies jyuh
  • The beginning of the end for microarrays?
    Nat Meth, Vol. 5, No. 7. (July 2008), pp. 585-587.
    by Jay Shendure
    posted to array by kintoki on 2008-08-20 10:58:45 as ** along with 5 people myourshaw ChrisEvelo megraw kengg marck
  • The universal protein resource (UniProt).
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by
    posted to pisite by kintoki on 2008-08-06 06:18:27 as ** along with 4 people jyuh renatomilani jteyra janasont
  • A dissection of specific and non-specific protein-protein interfaces.
    J Mol Biol, Vol. 336, No. 4. (27 February 2004), pp. 943-955.
    by RP Bahadur, P Chakrabarti, F Rodier, J Janin
    posted to pisite by kintoki on 2008-08-06 02:49:35 as ** along with 5 people bicko drastic choonpeng marti higueruelo
  • Protein-protein interfaces: analysis of amino acid conservation in homodimers.
    Proteins, Vol. 42, No. 1. (1 January 2001), pp. 108-124.
    by WS Valdar, JM Thornton
    posted to pisite by kintoki on 2008-08-06 02:47:34 as ** along with 1 person chad_davis
  • iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 410.
    by Robert D Finn, Mhairi Marshall, Alex Bateman
    posted to pisite by kintoki on 2008-08-05 11:54:12 as ** along with 6 people and 2 groups mdimmic barry chad_davis choonpeng massivemayhem antonkratz structural_bioinformatics Bioinformatics
  • The DIMA web resourceexploring the protein domain network
    Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 997-998.
    by Philipp Pagel, Matthias Oesterheld, Dmitrij Frishman
    posted to pisite by kintoki on 2008-08-05 11:48:35 as ** along with 3 people and 2 groups chad_davis marcius bootsy BioinfoCIPF SGU-CIPF
  • DIMA 2.0 predicted and known domain interactions.
    Nucleic Acids Res (13 November 2007)
    by Philipp Pagel, Matthias Oesterheld, Oksana Tovstukhina, Norman Strack, Volker Stümpflen, Dmitrij Frishman
    posted to pisite by kintoki on 2008-08-05 11:41:59 as ** along with 2 people chad_davis jyuh
  • 3did: interacting protein domains of known three-dimensional structure.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by A Stein, RB Russell, P Aloy
    posted to pisite by kintoki on 2008-08-05 11:38:35 as ** along with 4 people baaden bicko chad_davis grottenolm
  • Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP)
    Bioinformatics, Vol. 20, No. 7. (1 May 2004), pp. 1138-1150.
    by Wan K Kim, Dan M Bolser, Jong H Park
    posted to pisite by kintoki on 2008-08-05 11:23:17 as ** along with 2 people medic0747 cjeans
  • Using protein binding site prediction to improve protein docking.
    Gene (14 June 2008)
    by Bingding Huang, Michael Schroeder
    posted to pisite by kintoki on 2008-08-05 11:15:57 as ** along with 2 people chad_davis bicko
  • SCOPPI: a structural classification of protein-protein interfaces.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by C Winter, A Henschel, WK Kim, M Schroeder
    posted to pisite by kintoki on 2008-08-05 11:14:55 as ** along with 7 people and 4 groups ana kuhn bicko chad_davis marcius choonpeng Evangelia structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Principles of Protein-Protein Interactions: What are the Preferred Ways For Proteins To Interact?
    Chem. Rev. (21 March 2008)
    by O Keskin, A Gursoy, B Ma, R Nussinov
    posted to pisite by kintoki on 2008-08-05 10:53:00 as ** along with 5 people and 1 group jmrivort higueruelo allmensch GermanErlenkamp winterschlaefer Supramolecular
  • Interaction-Site Prediction for Protein Complexes: a Critical Assessment
    Bioinformatics (22 June 2007), btm323.
    by Huan-Xiang Zhou, Sanbo Qin
    posted to pisite by kintoki on 2008-08-04 11:36:04 as ** along with 10 people phoenixzxl tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi marti higueruelo
  • The DynDom database of protein domain motions.
    Bioinformatics (Oxford, England), Vol. 19, No. 10. (1 July 2003), pp. 1290-1291.
    by RA Lee, M Razaz, S Hayward
    posted to pisite by kintoki on 2008-08-04 09:37:28 as **
  • Structural basis for EGFR ligand sequestration by Argos
    Nature (25 May 2008)
    by Daryl E Klein, Steven E Stayrook, Fumin Shi, Kartik Narayan, Mark A Lemmon
    posted to eprots by kintoki on 2008-07-28 02:32:53 as **
  • Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins.
    Journal of molecular biology (7 June 2008)
    by Qifang Xu, Adrian A A Canutescu, Guoli Wang, Maxim Shapovalov, Zoran Obradovic, Roland L L Dunbrack
    posted to homo ppi by kintoki on 2008-07-18 04:01:26 as ** along with 2 people bicko chad_davis
  • PDBcal: A Comprehensive Dataset for Receptor-Ligand Interactions with Three-dimensional Structures and Binding Thermodynamics from Isothermal Titration Calorimetry
    Chemical Biology & Drug Design, Vol. 71, No. 6. (2008), pp. 529-532.
    by Liwei Li, Justin J Dantzer, Jonathan Nowacki, Brian J O’callaghan, Samy O Meroueh
    posted to ligand by kintoki on 2008-07-16 07:38:00 as ** along with 2 people massivemayhem higueruelo
  • A Gene Wiki for Community Annotation of Gene Function
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e175.
    by Jon W Huss, Camilo Orozco, James Goodale, Chunlei Wu, Serge Batalov, Tim J Vickers, Faramarz Valafar, Andrew I Su
    posted to no-tag by kintoki on 2008-07-14 00:53:44 as ** along with 15 people and 2 groups lptolik druvus stajich dullhunk tharris thomaskelder sjc inesdesantiago zwang ChrisEvelo reyez kristina GMTurner barriot jyuh Berkeley Mycology VisionLab
  • A probabilistic functional network of yeast genes.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558.
    by I Lee, SV Date, AT Adai, EM Marcotte
    posted to ppi by kintoki on 2008-07-01 03:40:43 as ** along with 15 people and 3 groups csgillespie irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant balicea svdate ellakat roys dbk-lab kdl EBI-regulation
  • Confirmation of Organized Modularity in the Yeast Interactome
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e153.
    by Nicolas Bertin, Nicolas Simonis, Denis Dupuy, Michael E Cusick, Jing-Dong J Han, Hunter B Fraser, Frederick P Roth, Marc Vidal
    posted to ppi by kintoki on 2008-07-01 03:16:30 as ** along with 1 person winterschlaefer
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to ppi by kintoki on 2008-07-01 02:15:03 as ** along with 24 people and 2 groups davidecellai dragonrez lfriedl balajis yoh j3xucite koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek carlk kdl GeneGo
  • Light-dependent regulation of structural flexibility in a photochromic fluorescent protein.
    Proceedings of the National Academy of Sciences of the United States of America (23 June 2008)
    by Hideaki Mizuno, Tapas Kumar Mal, Markus Wälchli, Akihiro Kikuchi, Takashi Fukano, Ryoko Ando, Jeyaraman Jeyakanthan, Junichiro Taka, Yoshitsugu Shiro, Mitsuhiko Ikura, Atsushi Miyawaki
    posted to eprots by kintoki on 2008-06-30 06:07:34 as **
  • Ultrafast shape recognition to search compound databases for similar molecular shapes.
    J Comput Chem (6 March 2007)
    by Pedro J J Ballester, W Graham G Richards
    posted to no-tag by kintoki on 2008-06-06 10:16:44 as ** along with 4 people operon massivemayhem ssgong tjimenez
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
    posted to no-tag by kintoki on 2008-06-05 01:08:23 as ** along with 12 people and 1 group tmmurali stajich reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr Berkeley Mycology
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to no-tag by kintoki on 2008-06-04 11:40:02 as ** along with 19 people and 2 groups waszak matthewsuderman jfr hpaces Ema chad_davis bpb dchughes djkt balicea shikin psique kaniko aprasad vplagnol maximilianh chrisamiller jyuh skoch3 GeneGo Koch_Lab
  • Sticking together? Falling apart? Exploring the dynamics of the interactome.
    Trends in biochemical sciences (17 April 2008)
    by Marc R R Wilkins, Sarah K K Kummerfeld
    posted to no-tag by kintoki on 2008-05-26 10:27:19 as ** along with 1 person jyuh
  • Human genetics: Dr Watson's base pairs
    Nature, Vol. 452, No. 7189. (16 April 2008), pp. 819-820.
    by Maynard V Olson
    posted to memo by kintoki on 2008-05-22 03:04:33 as ** along with 1 person dullhunk
  • Crystal Structure of a Self-Spliced Group II Intron
    Science, Vol. 320, No. 5872. (4 April 2008), pp. 77-82.
    by Navtej Toor, Kevin S Keating, Sean D Taylor, Anna M Pyle
    posted to eprots by kintoki on 2008-04-07 00:45:45 as ** along with 2 people austin bala
  • A docking analysis of the statistical physics of protein-protein recognition.
    Phys Biol, Vol. 2, No. 1-2. (June 2005)
    by J Bernauer, A Poupon, J Azé, J Janin
    posted to complementarity by kintoki on 2008-04-01 07:14:24 as ** along with 2 people bicko drastic
  • A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans
    Nature Genetics, Vol. 40, No. 2. (27 January 2008), pp. 181-188.
    by Insuk Lee, Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G Fraser, Edward M Marcotte
    posted to co-expression by kintoki on 2008-03-27 09:29:12 as ** along with 9 people and 1 group tharris jyuh tmmurali balicea capitall roys jiny meiklej jfr C. elegans / WormBase
  • Quantitative analysis of multi-protein interactions using FRET: Application to the SUMO pathway
    Protein Sci, Vol. 17, No. 4. (1 April 2008), pp. 777-784.
    by Sarah F Martin, Michael H Tatham, Ronald T Hay, Ifor D Samuel
    posted to experimental-technique ppi by kintoki on 2008-03-24 01:10:22 as ** along with 2 people jyuh amwands
  • von Hippel Lindau binding protein 1-mediated degradation of integrase affects HIV-1 gene expression at a postintegration step.
    Proc Natl Acad Sci U S A, Vol. 104, No. 34. (21 August 2007), pp. 13615-13620.
    by A Mousnier, N Kubat, A Massias-Simon, E Ségéral, JC Rain, R Benarous, S Emiliani, C Dargemont
    posted to co-expression by kintoki on 2008-03-18 04:20:41 as **
  • Integrating protein annotation resources through the Distributed Annotation System.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by PI Olason
    posted to das by kintoki on 2008-03-05 10:16:49 as **
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to co-expression by kintoki on 2008-03-04 03:05:27 as ** along with 8 people gurkanbebek gespim grahamc cjeans iris_2001 paolomarcatili nedwards carlk
  • A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae.
    Nucleic Acids Res, Vol. 29, No. 17. (1 September 2001), pp. 3513-3519.
    by A Grigoriev
    posted to co-expression by kintoki on 2008-03-04 03:04:27 as ** along with 2 people gurkanbebek tmmurali
  • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 482-486.
    by H Ge, Z Liu, GM Church, M Vidal
    posted to co-expression by kintoki on 2008-03-04 03:03:24 as ** along with 10 people and 1 group BioGeek lfriedl wnpx mmt gespim bluto ruvido grahamc roys paolomarcatili kdl
  • Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868.
    by MB Eisen, PT Spellman, PO Brown, D Botstein
    posted to co-expression by kintoki on 2008-03-04 03:01:47 as ** along with 21 people and 3 groups macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu maryee wnpx nirfriedman dquest karfunkel dps jo_davies tvdbulck bozdagd roys flavio48 kdl Bioinformatics BUiGEM
  • DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions.
    Bioinformatics (19 January 2008)
    by Julie Bernauer, Ranjit Prasad P Bahadur, Francis Rodier, Joël Janin, Anne Poupon
    posted to tsuchiya by kintoki on 2008-02-28 23:47:05 as ** along with 3 people higueruelo jteyra bicko
  • Modelling protein docking using shape complementarity, electrostatics and biochemical information
    Journal of Molecular Biology, Vol. 272, No. 1. (12 September 1997), pp. 106-120.
    by Henry A Gabb, Richard M Jackson, Michael J Sternberg
    posted to complementarity maeda method by kintoki on 2008-02-22 00:41:33 as ** along with 7 people and 3 groups jwm bicko yongzhao ima ffranca cjeans selrac Radiation_Damage Stressosome TSRI_MGL
  • A novel shape complementarity scoring function for protein-protein docking.
    Proteins, Vol. 51, No. 3. (15 May 2003), pp. 397-408.
    by R Chen, Z Weng
    posted to complementarity maeda method by kintoki on 2008-02-22 00:38:30 as ** along with 2 people ffranca harykumar
  • Shape complementarity at protein/protein interfaces.
    J Mol Biol, Vol. 234, No. 4. (20 December 1993), pp. 946-950.
    by MC Lawrence, PM Colman
    posted to complementarity shape by kintoki on 2008-02-21 10:23:18 as ** along with 2 people and 2 groups higueruelo jwm Radiation_Damage Stressosome
  • QSD quadratic shape descriptors. 2. Molecular docking using quadratic shape descriptors (QSDock).
    Proteins, Vol. 38, No. 1. (1 January 2000), pp. 79-94.
    by BB Goldman, WT Wipke
    posted to complementarity maeda method shape by kintoki on 2008-02-20 10:18:33 as **
  • GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    Bioinformatics, Vol. 20, No. 18., 3710.
    by Elizabeth I Boyle, Shuai Weng, Jeremy Gollub, Heng Jin, David Botstein, Michael M Cherry, Gavin Sherlock
    posted to array by kintoki on 2008-02-08 00:18:57 as ** along with 3 people cjeans macavity1g roys
  • Learning the parts of objects by non-negative matrix factorization.
    Nature, Vol. 401, No. 6755. (21 October 1999), pp. 788-791.
    by DD Lee, HS Seung
    posted to array by kintoki on 2008-02-07 01:18:08 as ** along with 14 people and 4 groups JacquesC davidr dragonrez anar jfr yas yama_tah pliz scis0000001 oannes cerkut atbrew zeppe cager NU-PRL T_lab Regulomics_UCHSC contact-id
  • Metagenes and molecular pattern discovery using matrix factorization.
    Proc Natl Acad Sci U S A, Vol. 101, No. 12. (23 March 2004), pp. 4164-4169.
    by JP Brunet, P Tamayo, TR Golub, JP Mesirov
    posted to array by kintoki on 2008-02-07 01:05:35 as ** along with 9 people and 1 group kentsis dragonrez radek yas balicea yama_tah aviad_work ivokwee GeeSharpMinor T_lab
  • notes Visualizing spatially correlated dynamics that directs RNA conformational transitions
    Nature, Vol. 450, No. 7173., pp. 1263-1267.
    by Qi Zhang, Andrew C Stelzer, Charles K Fisher, Hashim M Al-Hashimi
    posted to no-tags by kintoki on 2007-12-25 01:06:14 as **** along with 7 people and 3 groups cactus sobolevnrm niallhaslam joseph_x_zhou kluck nigham simone baker-group HIV_DR Soft Matter
  • Stochastic gene expression out-of-steady-state in the cyanobacterial circadian clock
    Nature, Vol. 450, No. 7173. (20 December 2007), pp. 1249-1252.
    by Jeffrey R Chabot, Juan M Pedraza, Prashant Luitel, Alexander van Oudenaarden
    posted to no-tags by kintoki on 2007-12-25 01:04:28 as ** along with 4 people austin balabu margaritis cactus
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