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de lusk library [186 articles]

Articles dernièrement stockés dans la bibliothèque de lusk triées par importance .
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to evolution tfbs by lusk on 2008-01-21 22:07:56 as ***** along with 8 people and 1 group xili03 aalibes chad_davis sebastien_vigneau Garamonfok nklee maximilianh emptyhb BioinfoCIPF
  • Coherence and Timing of Cell Cycle Start Examined at Single-Cell Resolution
    Molecular Cell, Vol. 21, No. 1. (6 January 2006), pp. 3-14.
    by James M Bean, Eric D Siggia, Frederick R Cross
    posted to flow_cytometry inside by lusk on 2007-05-08 01:30:44 as ***** along with 1 person balabu
  • Constructing transcriptional regulatory networks
    Genes Dev., Vol. 19, No. 13. (1 July 2005), pp. 1499-1511.
    by Alexandre Blais, Brian D Dynlacht
    posted to inside review by lusk on 2007-04-25 21:11:37 as ***** along with 6 people and 2 groups brant balicea xico tabu braingrind jtomasch EisenLab WetBiology
  • Computational methods for transcriptional regulation
    Current Opinion in Genetics & Development, Vol. 15, No. 2. (April 2005), pp. 214-221.
    by Eric D Siggia
    posted to inside review by lusk on 2007-04-25 21:08:54 as *****
  • Gene expression from random libraries of yeast promoters.
    Genetics, Vol. 172, No. 4. (April 2006), pp. 2113-2122.
    by M Ligr, R Siddharthan, FR Cross, ED Siggia
    posted to inside random_library by lusk on 2007-04-21 18:28:38 as ***** along with 1 person tresch
  • Beginning at the end with SUMO
    Nature Structural & Molecular Biology, Vol. 12, No. 7., pp. 565-566.
    by Michael J Matunis, Cecile M Pickart
    posted to specificity outside by lusk on 2007-02-07 20:17:05 as *****
  • SUMO wrestling with specificity.
    Structure, Vol. 10, No. 3. (March 2002), pp. 281-282.
    by AP VanDemark, CP Hill
    posted to specificity outside by lusk on 2007-02-07 20:13:58 as *****
  • Structural basis for E2-mediated SUMO conjugation revealed by a complex between ubiquitin-conjugating enzyme Ubc9 and RanGAP1.
    Cell, Vol. 108, No. 3. (8 February 2002), pp. 345-356.
    by V Bernier-Villamor, DA Sampson, MJ Matunis, CD Lima
    posted to structure specificity outside by lusk on 2007-02-04 03:31:28 as *****
  • Sumoylation of heterogeneous nuclear ribonucleoproteins, zinc finger proteins, and nuclear pore complex proteins: a proteomic analysis.
    Proc Natl Acad Sci U S A, Vol. 101, No. 23. (8 June 2004), pp. 8551-8556.
    by T Li, E Evdokimov, RF Shen, CC Chao, E Tekle, T Wang, ER Stadtman, DC Yang, PB Chock
    posted to 2d_gel methods outside proteomic by lusk on 2007-02-04 03:20:48 as *****
  • Backup without redundancy: genetic interactions reveal the cost of duplicate gene loss.
    Mol Syst Biol, Vol. 3 (2007)
    by J Ihmels, SR Collins, M Schuldiner, NJ Krogan, JS Weissman
    posted to next_project by lusk on 2007-07-16 22:04:58 as **** along with 2 people aprasad bpcusack
  • Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae.
    Nucleic Acids Res, Vol. 34, No. 3. (2006), pp. 917-927.
    by X Yu, J Lin, T Masuda, N Esumi, DJ Zack, J Qian
    posted to cooperativity cutoff_model by lusk on 2007-05-16 19:40:31 as **** along with 3 people and 1 group balajis malcook oannes Regulomics_UCHSC
  • cis-regulatory logic of short-range transcriptional repression in Drosophila melanogaster.
    Mol Cell Biol, Vol. 25, No. 9. (May 2005), pp. 3411-3420.
    by MM Kulkarni, DN Arnosti
    posted to inside by lusk on 2007-04-21 18:30:27 as **** along with 2 people and 1 group adepace olympos EisenLab
  • A systematic method for identifying small-molecule modulators of protein–protein interactions
    PNAS
    posted to methods outside sm_mol by lusk on 2007-02-28 21:07:27 as ****
  • C&EN: COVERSTORY - THE SMALL-MOLECULE APPROACH TO BIOLOGY
    posted to methods outside sm_mol by lusk on 2007-02-28 20:50:02 as ****
  • Distinct and overlapping sets of SUMO-1 and SUMO-2 target proteins revealed by quantitative proteomics.
    Mol Cell Proteomics, Vol. 5, No. 12. (December 2006), pp. 2298-2310.
    by AC Vertegaal, JS Andersen, SC Ogg, RT Hay, M Mann, AI Lamond
    posted to proteomic outside methods by lusk on 2007-02-09 20:50:29 as ****
  • Systematic identification and analysis of mammalian small ubiquitin-like modifier substrates.
    J Biol Chem, Vol. 280, No. 6. (11 February 2005), pp. 5004-5012.
    by CB Gocke, H Yu, J Kang
    posted to sumo outside methods by lusk on 2007-02-07 20:46:30 as **** along with 1 person jyuh
  • Multiple domains in Siz SUMO ligases contribute to substrate selectivity
    J Cell Sci, Vol. 119, No. 22. (15 November 2006), pp. 4749-4757.
    by Alison Reindle, Irina Belichenko, Gwendolyn R Bylebyl, Xiaole L Chen, Nishant Gandhi, Erica S Johnson
    posted to specificity outside e3 by lusk on 2007-02-07 20:22:07 as **** along with 1 person phoenixzxl
  • Distinct functional domains of Ubc9 dictate cell survival and resistance to genotoxic stress.
    Mol Cell Biol, Vol. 26, No. 13. (July 2006), pp. 4958-4969.
    by RC van Waardenburg, DM Duda, CS Lancaster, BA Schulman, MA Bjornsti
    posted to specificity outside by lusk on 2007-02-07 20:10:26 as ****
  • Role of an N-terminal site of Ubc9 in SUMO-1, -2, and -3 binding and conjugation.
    Biochemistry, Vol. 42, No. 33. (26 August 2003), pp. 9959-9969.
    by MH Tatham, S Kim, B Yu, E Jaffray, J Song, J Zheng, MS Rodriguez, RT Hay, Y Chen
    posted to structure specificity outside by lusk on 2007-02-04 03:51:16 as ****
  • The RanBP2 SUMO E3 ligase is neither HECT- nor RING-type.
    Nat Struct Mol Biol, Vol. 11, No. 10. (October 2004), pp. 984-991.
    by A Pichler, P Knipscheer, H Saitoh, TK Sixma, F Melchior
    posted to structure specificity ranbp2 outside by lusk on 2007-02-04 03:16:39 as ****
  • Unique binding interactions among Ubc9, SUMO and RanBP2 reveal a mechanism for SUMO paralog selection
    Nature Structural & Molecular Biology, Vol. 12, No. 1. (19 December 2004), 67.
    by Michael H Tatham, Suhkmann Kim, Ellis Jaffray, Jing Song, Yuan Chen, Ronald T Hay
    posted to structure specificity outside by lusk on 2007-02-04 03:11:16 as ****
  • Insights into E3 ligase activity revealed by a SUMO–RanGAP1–Ubc9–Nup358 complex
    Nature, Vol. 435, No. 7042., pp. 687-692.
    by David Reverter, Christopher D Lima
    posted to structure outside e3 by lusk on 2007-02-04 03:01:50 as ****
  • Purification and activity assays for Ubc9, the ubiquitin-conjugating enzyme for the small ubiquitin-like modifier SUMO.
    Methods Enzymol, Vol. 398 (2005), pp. 74-87.
    by AA Yunus, CD Lima
    posted to purification outside methods activity by lusk on 2007-02-04 02:56:03 as **** along with 1 person caroline
  • An extended consensus motif enhances the specificity of substrate modification by SUMO
    The EMBO Journal, Vol. aop, No. current. (12 October 2006)
    by Shen-Hsi Yang, Alex Galanis, James Witty, Andrew D Sharrocks
    posted to specificity outside motif consensus by lusk on 2007-02-04 02:47:40 as ****
  • Ubc9 fusion–directed SUMOylation (UFDS): a method to analyze function of protein SUMOylation
    Nature Methods, Vol. 4, No. 3. (04 February 2007), pp. 245-250.
    by Astrid Jakobs, Jesko Koehnke, Fabian Himstedt, Martin Funk, Bernhard Korn, Matthias Gaestel, Rainer Niedenthal
    posted to methods outside by lusk on 2007-04-04 00:09:36 as ***
  • SUMO, the three Rs and cancer.
    Curr Top Microbiol Immunol, Vol. 313 (2007), pp. 49-71.
    by JS Seeler, O Bischof, K Nacerddine, A Dejean
    posted to cancer outside review by lusk on 2007-04-03 23:45:13 as ***
  • Dissecting the ubiquitin pathway by mass spectrometry
    Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, Vol. 1764, No. 12. (December 2006), pp. 1940-1947.
    by Ping Xu, Junmin Peng
    posted to outside proteomic review by lusk on 2007-04-03 23:43:52 as *** along with 1 person jyuh
  • Discovery of Small Molecule Inhibitors of the Interaction of the Thyroid Hormone Receptor with Transcriptional Coregulators
    J. Biol. Chem., Vol. 280, No. 52. (30 December 2005), pp. 43048-43055.
    by Leggy A Arnold, Eva Estebanez-Perpina, Marie Togashi, Natalia Jouravel, Anang Shelat, Andrea C Mcreynolds, Ellena Mar, Phuong Nguyen, John D Baxter, Robert J Fletterick, Paul Webb, Kiplin R Guy
    posted to methods outside sm_mol by lusk on 2007-04-03 01:23:03 as ***
  • SUMO protein modification.
    Biochim Biophys Acta, Vol. 1695, No. 1-3. (29 November 2004), pp. 113-131.
    by RJ Dohmen
    posted to outside review by lusk on 2007-03-01 21:32:36 as *** along with 1 person viktor21614
  • SUMO: a ubiquitin-like protein modifier.
    Yale J Biol Med, Vol. 78, No. 4. (July 2005), pp. 197-201.
    by MB Kroetz
    posted to outside review by lusk on 2007-03-01 21:29:24 as ***
  • Functional variation and evolution of non-coding DNA
    Current Opinion in Genetics & Development, Vol. 16, No. 6. (December 2006), pp. 559-564.
    by Christine P Bird, Barbara E Stranger, Emmanouil T Dermitzakis
    posted to inside review by lusk on 2007-02-13 23:45:16 as *** along with 7 people and 4 groups dpollard dchughes adepace sujaikumar candypmcg Stew cisevol EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • The molecular population genetics of regulatory genes
    Molecular Ecology, Vol. 9, No. 10. (2000), pp. 1451-1461.
    by Michael D Purugganan
    posted to inside popgen review by lusk on 2007-02-13 23:43:42 as ***
  • The transcriptional regulatory code of eukaryotic cells - insights from genome-wide analysis of chromatin organization and transcription factor binding
    Current Opinion in Cell Biology, Vol. 18, No. 3. (June 2006), pp. 291-298.
    by Leah O Barrera, Bing Ren
    posted to inside review by lusk on 2007-02-13 23:42:55 as *** along with 4 people and 4 groups dchughes cmm oannes vietanh0 FAB-lab G4ID Regulomics_UCHSC Genetics-of-Gambling
  • Evolution of cis-regulatory regions versus codifying regions.
    Int J Dev Biol, Vol. 47, No. 7-8. (2003), pp. 665-673.
    by F Rodríguez-Trelles, R Tarrío, FJ Ayala
    posted to inside review by lusk on 2007-02-13 23:36:06 as ***
  • Orchestrated response: a symphony of transcription factors for gene control.
    Genes Dev, Vol. 14, No. 20. (15 October 2000), pp. 2551-2569.
    by B Lemon, R Tjian
    posted to inside review by lusk on 2007-02-13 23:32:20 as *** along with 2 people and 3 groups ana nickluscombe structural_bioinformatics Bioinformatics EBI-regulation
  • Transcriptional coactivator complexes.
    Annu Rev Biochem, Vol. 70 (2001), pp. 475-501.
    by AM Näär, BD Lemon, R Tjian
    posted to review inside by lusk on 2007-02-13 23:30:32 as *** along with 1 person and 1 group nickluscombe EBI-regulation
  • Transcriptional regulation in Drosophila: the post-genome challenge.
    Funct Integr Genomics, Vol. 1, No. 4. (March 2001), pp. 223-234.
    by MD Biggin, R Tjian
    posted to inside review by lusk on 2007-02-13 23:29:27 as ***
  • Transcription regulation and animal diversity.
    Nature, Vol. 424, No. 6945. (10 July 2003), pp. 147-151.
    by M Levine, R Tjian
    posted to inside review by lusk on 2007-02-13 23:28:22 as *** along with 6 people and 2 groups xico nickluscombe djkt Jporci heliopais brant WetBiology EBI-regulation
  • Regulatory diversity among metazoan co-activator complexes.
    Nat Rev Mol Cell Biol, Vol. 5, No. 5. (May 2004), pp. 403-410.
    by DJ Taatjes, MT Marr, R Tjian
    posted to inside review by lusk on 2007-02-13 23:27:57 as ***
  • Adaptations to fluctuating selection in Drosophila.
    Proc Natl Acad Sci U S A (7 February 2007)
    by Ville Mustonen, Michael Lässig
    posted to theory selection jc by lusk on 2007-02-10 01:27:06 as *** along with 1 person and 1 group dpollard EisenLab
  • Global Analysis of Protein Sumoylation in Saccharomyces cerevisiae
    J. Biol. Chem., Vol. 279, No. 44. (29 October 2004), pp. 45662-45668.
    by James A Wohlschlegel, Erica S Johnson, Steven I Reed, John R Yates
    posted to proteomic outside methods by lusk on 2007-02-09 20:52:51 as ***
  • A proteomic study of SUMO-2 target proteins.
    J Biol Chem, Vol. 279, No. 32. (6 August 2004), pp. 33791-33798.
    by AC Vertegaal, SC Ogg, E Jaffray, MS Rodriguez, RT Hay, JS Andersen, M Mann, AI Lamond
    posted to proteomic outside methods by lusk on 2007-02-09 20:50:54 as ***
  • A Universal Strategy for Proteomic Studies of SUMO and Other Ubiquitin-like Modifiers
    Mol Cell Proteomics, Vol. 4, No. 1. (1 January 2005), pp. 56-72.
    by German Rosas-Acosta, William K Russell, Adeline Deyrieux, David H Russell, Van G Wilson
    posted to proteomic outside methods by lusk on 2007-02-09 20:38:30 as ***
  • A Proteome-wide Approach Identifies Sumoylated Substrate Proteins in Yeast
    J. Biol. Chem., Vol. 279, No. 40. (1 October 2004), pp. 41346-41351.
    by Vikram G Panse, Ulrike Hardeland, Thilo Werner, Bernhard Kuster, Ed Hurt
    posted to proteomic outside methods by lusk on 2007-02-09 20:37:27 as ***
  • Defining the SUMO-modified Proteome by Multiple Approaches in Saccharomyces cerevisiae
    J. Biol. Chem., Vol. 280, No. 6. (11 February 2005), pp. 4102-4110.
    by Thomas J Hannich, Alaron Lewis, Mary B Kroetz, Shyr-Jiann Li, Heinrich Heide, Andrew Emili, Mark Hochstrasser
    posted to proteomic outside methods by lusk on 2007-02-09 20:36:28 as *** along with 1 person hplatero
  • A Proteomic Strategy for Gaining Insights into Protein Sumoylation in Yeast
    Mol Cell Proteomics, Vol. 4, No. 3. (1 March 2005), pp. 246-254.
    by Carilee Denison, Adam D Rudner, Scott A Gerber, Corey E Bakalarski, Danesh Moazed, Steven P Gygi
    posted to proteomic outside methods by lusk on 2007-02-09 20:34:24 as ***
  • Chip-based analysis of SUMO (small ubiquitin-like modifier) conjugation to a target protein
    Biosensors and Bioelectronics, Vol. 22, No. 7. (15 February 2007), pp. 1260-1267.
    by Young-Hee Oh, Mi-Young Hong, Zongwen Jin, Taeryong Lee, Min-Kyu Han, Sunyoung Park, Hak-Sung Kim
    posted to outside methods by lusk on 2007-02-07 20:18:55 as ***
  • Detection of modification by ubiquitin-like proteins.
    Methods, Vol. 38, No. 1. (January 2006), pp. 35-38.
    by EG Jaffray, RT Hay
    posted to review outside methods by lusk on 2007-02-06 21:04:39 as ***
  • SUMO: a history of modification.
    Mol Cell, Vol. 18, No. 1. (1 April 2005), pp. 1-12.
    by RT Hay
    posted to review outside by lusk on 2007-02-06 21:03:52 as *** along with 1 person inbetweener
  • PDSM, a motif for phosphorylation-dependent SUMO modification.
    Proc Natl Acad Sci U S A, Vol. 103, No. 1. (3 January 2006), pp. 45-50.
    by V Hietakangas, J Anckar, HA Blomster, M Fujimoto, JJ Palvimo, A Nakai, L Sistonen
    posted to specificity outside motif by lusk on 2007-02-06 21:02:05 as ***
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