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de natstreet library [2738 articles]

Articles dernièrement stockés dans la bibliothèque de natstreet .
  • Physical protein-protein interactions predicted from microarrays
    Bioinformatics (1 October 2008), btn498.
    by Ta-Tsen Soong, Kazimierz O Wrzeszczynski, Burkhard Rost
    posted to no-tag by natstreet on 2008-10-07 18:06:15 as ** along with 4 people grahamc phoenixzxl neils renatomilani
  • Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms
    BMC Bioinformatics, Vol. 8 (08 March 2007), 82.
    by Amit U Sinha, Jaroslaw Meller
    posted to no-tag by natstreet on 2008-10-07 17:44:46 as ** along with 2 people and 2 groups indigoviolet stajich EisenLab Berkeley Mycology
  • PhyloGena - a user-friendly system for automated phylogenetic annotation of unknown sequences.
    Bioinformatics (1 March 2007)
    by Hanekamp Kristian, Uta Bohnebeck, Bánk Beszteri, Klaus Valentin
    posted to no-tag by natstreet on 2008-10-07 17:35:55 as ** along with 1 person papamicd
  • Insertion-deletion polymorphisms (indels) as genetic markers in natural populations
    BMC Genetics, Vol. 9 (22 January 2008), 8.
    by Ulo Vali, Mikael Brandstrom, Malin Johansson, Hans Ellegren
    posted to no-tag by natstreet on 2008-10-07 17:30:30 as ** along with 1 person druvus
  • Versatile and open software for comparing large genomes.
    Genome Biol, Vol. 5, No. 2. (2004)
    by S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, SL Salzberg
    posted to no-tag by natstreet on 2008-10-07 17:28:52 as ** along with 6 people druvus adelcher AaronDarling michC yoanjacquemin Neeperando
  • Interclonal and within-tree variation in wood properties of poplar clones
    Journal of Forestry Research, Vol. 14, No. 4. (7 December 2003), pp. 263-268.
    by Fang Sheng-Zuo, Yang Wen-Zhong
    posted to no-tag by natstreet on 2008-10-07 15:17:25 as **
  • TreeGenes: A Forest Tree Genome Database.
    International journal of plant genomics, Vol. 2008 (2008)
    by JL Wegrzyn, JM Lee, BR Tearse, DB Neale
    posted to no-tag by natstreet on 2008-10-07 10:55:48 as ** along with 1 person druvus
  • Functional genomics analysis of foliar condensed tannin and phenolic glycoside regulation in natural cottonwood hybrids.
    Tree physiology, Vol. 25, No. 12. (December 2005), pp. 1475-1486.
    by SA Harding, H Jiang, ML Jeong, FL Casado, HW Lin, CJ Tsai
    posted to no-tag by natstreet on 2008-10-06 15:41:35 as **
  • The choice of genetic material for mechanistic studies of adaptation in forest trees.
    Tree physiology, Vol. 14, No. 7_9. (July-September 1994), pp. 781-796.
    by R. F Stettler, H. D Bradshaw Jr
    posted to no-tag by natstreet on 2008-10-06 14:26:14 as **
  • Big data: The future of biocuration
    Nature, Vol. 455, No. 7209. (2008), pp. 47-50.
    by Doug Howe, Maria Costanzo, Petra Fey, Takashi Gojobori, Linda Hannick, Winston Hide, David P Hill, Renate Kania, Mary Schaeffer, Susan St Pierre, Simon Twigger, Owen White, Yon
    posted to no-tag by natstreet on 2008-10-06 12:28:37 as ** along with 11 people and 1 group christoph_steinbeck thomaskelder druvus vobios hpiwowar amarois Zephyrus psique fgibson dullhunk neils Roswell Cancer Crosstalk
  • Genotypic variation in tolerance to elevated ozone in rice: dissection of distinct genetic factors linked to tolerance mechanisms
    J. Exp. Bot., Vol. 59, No. 13. (1 October 2008), pp. 3741-3752.
    by Michael Frei, Juan P Tanaka, Matthias Wissuwa
    posted to no-tag by natstreet on 2008-10-06 08:53:19 as **
  • Eleven Golden Rules of Quantitative RT-PCR
    Plant Cell, Vol. 20, No. 7. (1 July 2008), pp. 1736-1737.
    by Michael K Udvardi, Tomasz Czechowski, Wolf-Rudiger Scheible
    posted to no-tag by natstreet on 2008-10-02 10:05:11 as ** along with 4 people druvus udivi bjbecerra aleysia
  • OrthoMCL: identification of ortholog groups for eukaryotic genomes.
    Genome Res, Vol. 13, No. 9. (September 2003), pp. 2178-2189.
    by L Li, CJ Stoeckert, DS Roos
    posted to no-tag by natstreet on 2008-10-02 10:04:53 as ** along with 9 people and 2 groups druvus tharris mdimmic operon indigoviolet AaronDarling bluto maximilianh ninch C. elegans / WormBase EisenLab
  • Effects of transgenic hybrid aspen overexpressing polyphenol oxidase on rhizosphere diversity.
    Applied and environmental microbiology, Vol. 74, No. 17. (September 2008), pp. 5340-5348.
    by KL Oliver, RC Hamelin, WE Hintz
    posted to no-tag by natstreet on 2008-10-02 10:04:34 as **
  • Ozone-induced changes in photosynthesis and photorespiration of hybrid poplar in relation to the developmental stage of the leaves.
    Physiologia plantarum (18 September 2008)
    by Matthieu Bagard, Didier Le Thiec, Emilien Delacote, Marie-Paule P Hasenfratz-Sauder, Jacques Banvoy, Joëlle Gérard, Pierre Dizengremel, Yves Jolivet
    posted to no-tag by natstreet on 2008-10-02 10:04:16 as **
  • The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks.
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Michael Hsing, Kendall G Byler, Artem Cherkasov
    posted to no-tag by natstreet on 2008-10-01 16:42:38 as ** along with 3 people kluck dolchan renatomilani
  • Employing conservation of co-expression to improve functional inference
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Carsten Daub, Erik Sonnhammer
    posted to no-tag by natstreet on 2008-10-01 16:42:02 as ** along with 4 people pengchy lptolik klo barriot
  • Classifying transcription factor targets and discovering relevant biological features
    Biology Direct, Vol. 3 (30 May 2008), 22.
    by Dustin T Holloway, Mark Kon, Charles Delisi
    posted to no-tag by natstreet on 2008-10-01 16:35:12 as **
  • A nitty-grritty aspect of correlation and network inference from gene expression data
    Biology Direct, Vol. 3 (20 August 2008), 35.
    by Lev B Klebanov, Andrei YU Yakovlev
    posted to no-tag by natstreet on 2008-10-01 16:34:51 as **
  • Regulon organization of Arabidopsis
    BMC Plant Biology, Vol. 8, No. 1. (2008)
    by Wieslawa Mentzen, Eve Wurtele
    posted to no-tag by natstreet on 2008-10-01 16:28:53 as **
  • OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 699-707.
    by JC Chiu, EK Lee, MG Egan, IN Sarkar, GM Coruzzi, R DeSalle
    posted to no-tag by natstreet on 2008-09-30 12:03:57 as ** along with 3 people and 1 group druvus operon indigoviolet EisenLab
  • Mapping and sequencing complex genomes: let's get physical!
    Nat Rev Genet, Vol. 5, No. 8. (2004), pp. 578-588.
    by Blake C Meyers, Simone Scalabrin, Michele Morgante
    posted to no-tag by natstreet on 2008-09-30 10:46:59 as **
  • Diversity Arrays Technology (DArT) for Pan-Genomic Evolutionary Studies of Non-Model Organisms
    PLoS ONE, Vol. 3, No. 2. (27 February 2008), e1682.
    by Karen E James, Harald Schneider, Stephen W Ansell, Margaret Evers, Lavinia Robba, Grzegorz Uszynski, Niklas Pedersen, Angela E Newton, Stephen J Russell, Johannes C Vogel, Andrzej Kilian
    posted to no-tag by natstreet on 2008-09-30 09:46:50 as **
  • Comparative sequence analysis between orthologous regions of the Arabidopsis and Populus genomes reveals substantial synteny and microcollinearity
    Canadian Journal of Forest Research (November 2003), pp. 2245-2251.
    by Brigid Stirling, Zamin K Yang, Lee E Gunter, Gerald A Tuskan, Bradshaw
    posted to no-tag by natstreet on 2008-09-30 09:38:51 as **
  • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    Nucl. Acids Res. (26 July 2008), gkn425.
    by Juliane C Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer
    posted to no-tag by natstreet on 2008-09-29 15:22:18 as ** along with 3 people dakelley caseybrown GustavoLacerda
  • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
    Genome Res, Vol. 17, No. 11. (November 2007), pp. 1697-1706.
    by Juliane C C Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer
    posted to no-tag by natstreet on 2008-09-29 15:21:55 as ** along with 9 people and 1 group timflutre stajich ghattem azazello GustavoLacerda niallhaslam flexer jwhitney iris42 Berkeley Mycology
  • Perturbed lignification impacts tree growth in hybrid poplar - a function of sink strength, vascular integrity and photosynthetic assimilation.
    Plant physiology (19 September 2008)
    by Heather D D Coleman, A Lacey L Samuels, Robert D D Guy, Shawn D D Mansfield
    posted to no-tag by natstreet on 2008-09-29 13:35:56 as **
  • Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR.
    BMC Bioinformatics, Vol. 7 (2006)
    by R Goll, T Olsen, G Cui, J Florholmen
    posted to no-tag by natstreet on 2008-09-29 13:35:36 as ** along with 2 people druvus jfr
  • Statistical Significance of quantitative PCR
    BMC Bioinformatics, Vol. 8 (20 April 2007), 131.
    by Yann Karlen, Alan Mcnair, Sebastien Perseguers, Christian Mazza, Nicolas Mermod
    posted to no-tag by natstreet on 2008-09-29 13:35:16 as ** along with 4 people druvus jyuh jfr yevishere
  • Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrej N Spiess, Caroline Feig, Christian Ritz
    posted to no-tag by natstreet on 2008-09-29 13:34:25 as ** along with 4 people druvus kengg mariakmejia jyuh
  • Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom
    posted to no-tag by natstreet on 2008-09-29 13:33:50 as ** along with 8 people druvus heliopais robertvandenberg dquest kengg bootsy bertelsen jyuh
  • RReportGenerator : Automatic reports from routine statistical analysis using R
    Bioinformatics (24 November 2007), btm556.
    by Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, David Kieffer, Anne-Laure Morand, Laurent Brino, Olivier Poch
    posted to no-tag by natstreet on 2008-09-29 13:33:11 as ** along with 7 people druvus jyuh jfr waszak mailund maralena GeeSharpMinor
  • Inference of selection from multiple species alignments.
    Curr Opin Genet Dev, Vol. 12, No. 6. (December 2002), pp. 688-694.
    by Z Yang
    posted to no-tag by natstreet on 2008-09-29 13:32:55 as ** along with 5 people druvus gjuggler operon mingzhi friendpine
  • Sequencing of natural strains of Arabidopsis thaliana with short reads
    Genome Research (September 2008)
    by Stephan Ossowski, Korbinian Schneeberger, Richard M Clark, Christa Lanz, Norman Warthmann, Detlef Weigel
    posted to no-tag by natstreet on 2008-09-29 13:32:17 as ** along with 2 people and 1 group druvus stajich Berkeley Mycology
  • Analysis of Phylogenetics and Evolution with R (Use R)
    (27 July 2006)
    by Emmanuel Paradis
    posted to no-tag by natstreet on 2008-09-29 13:32:09 as ** along with 1 person druvus
  • Ecological Models and Data in R
    (21 July 2008)
    by Benjamin M Bolker
    posted to no-tag by natstreet on 2008-09-29 13:31:48 as ** along with 1 person druvus
  • qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. 1549-1551.
    by C Ritz, AN Spiess
    posted to no-tag by natstreet on 2008-09-24 12:52:01 as ** along with 2 people druvus jyuh
  • NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways.
    Nucleic acids research (4 June 2008)
    by Sylvain Brohée, Karoline Faust, Gipsi Lima-Mendez, Olivier Sand, Rekin's Janky, Gilles Vanderstocken, Yves Deville, Jacques van Helden
    posted to no-tag by natstreet on 2008-09-22 13:14:54 as ** along with 5 people druvus jfr bootsy Borelli jyuh
  • Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level
    Heredity, Vol. aop, No. current.
    by AL Hughes
    posted to no-tag by natstreet on 2008-09-22 13:14:51 as ** along with 3 people druvus stajich gjuggler
  • BOV - a web-based BLAST output visualization tool
    BMC Genomics, Vol. 9 (15 September 2008), 414.
    by Rajesh Gollapudi, Kashi Revanna, Chris Hemmerich, Sarah Schaack, Qunfeng Dong
    posted to no-tag by natstreet on 2008-09-22 13:14:48 as ** along with 3 people and 1 group druvus cisevol operon BergmanLab
  • Bias and Sampling Error of the Estimated Proportion of Genotypic Variance Explained by Quantitative Trait Loci Determined From Experimental Data in Maize Using Cross Validation and Validation With Independent Samples
    Genetics, Vol. 154, No. 4. (1 April 2000), pp. 1839-1849.
    by Friedrich H Utz, Albrecht E Melchinger, Chris C Schon
    posted to no-tag by natstreet on 2008-09-18 11:02:21 as **
  • Animal MicroRNAs Confer Robustness to Gene Expression and Have a Significant Impact on 3'UTR Evolution.
    Cell (7 December 2005)
    by Alexander Stark, Julius Brennecke, Natascha Bushati, Robert B B Russell, Stephen M M Cohen
    posted to no-tag by natstreet on 2008-09-17 09:08:28 as ** along with 9 people and 2 groups jfr textoris dpollard mortenlindow mtagaya Garamonfok Evangelia heliopais emptyhb EisenLab microRNA
  • Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants
    BMC Genomics, Vol. 9 (21 April 2008), 183.
    by Matthieu G Conte, Sylvain Gaillard, Gaetan Droc, Christophe Perin
    posted to no-tag by natstreet on 2008-09-16 11:44:57 as ** along with 3 people druvus kengg dandaman
  • The Generation Challenge Programme comparative plant stress-responsive gene catalogue.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by S Wanchana, S Thongjuea, VJ Ulat, M Anacleto, R Mauleon, M Conte, M Rouard, M Ruiz, N Krishnamurthy, K Sjolander, T van Hintum, RM Bruskiewich
    posted to no-tag by natstreet on 2008-09-16 11:38:14 as ** along with 1 person druvus
  • Nature's Swiss Army Knife: The Diverse Protective Roles of Anthocyanins in Leaves.
    Journal of biomedicine & biotechnology, Vol. 2004, No. 5. (2004), pp. 314-320.
    by Kevin S Gould
    posted to no-tag by natstreet on 2008-09-15 15:20:53 as **
  • Effect of ABA upon anthocyanin synthesis in regenerated torenia shoots.
    Journal of plant research, Vol. 119, No. 2. (March 2006), pp. 137-144.
    by Y Nagira, K Ikegami, T Koshiba, Y Ozeki
    posted to no-tag by natstreet on 2008-09-15 14:55:47 as **
  • ABA and sugar effects on anthocyanin formation in grape berry cultured in vitro
    Scientia Horticulturae, Vol. 90, No. 1-2. (29 October 2001), pp. 121-130.
    by Shin Hiratsuka, Homare Onodera, Yoshitaka Kawai, Tatsuya Kubo, Hisashi Itoh, Ryuji Wada
    posted to no-tag by natstreet on 2008-09-15 14:52:14 as **
  • Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution
    The American Naturalist, Vol. 164, No. 6. (December 2004), pp. 683-695.
    by Marguerite A Butler, Aaron A King
    posted to no-tag by natstreet on 2008-09-15 11:28:48 as ** along with 1 person druvus
  • A new real-time PCR method to overcome significant quantitative inaccuracy due to slight amplification inhibition
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Michele Guescini, Davide Sisti, Marco Rocchi, Laura Stocchi, Vilberto Stocchi
    posted to no-tag by natstreet on 2008-09-15 11:27:39 as ** along with 4 people druvus jyuh GeeSharpMinor colinDotAIBN
  • The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere
    Annual Review of Ecology, Evolution, and Systematics, Vol. 37, No. 1. (2006), pp. 519-544.
    by Matthew B Jones, Mark P Schildhauer, OJ Reichman, Shawn Bowers
    posted to no-tag by natstreet on 2008-09-14 16:44:41 as **
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