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de nedwards library [389 articles]

Articles dernièrement stockés dans la bibliothèque de nedwards .
  • Exploring the Precursor Ion Exclusion Feature of Liquid Chromatography−Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry for Improving Protein Identification in Shotgun Proteome Analysis
    Anal. Chem., Vol. 80, No. 12. (15 June 2008), pp. 4696-4710.
    by Nan Wang, Liang Li
    posted to tandem-mass-spectrometry proteomics dynamic-exclusion by nedwards on 2008-07-03 21:08:53 as **
  • Recognition of the Carboxy-Terminal Peptide in Cyanogen Bromide Digests of Proteins
    Anal. Chem., Vol. 67, No. 9. (1995), pp. 1644-1645.
    by Constance M Murphy, Catherine Fenselau
    posted to tandem-mass-spectrometry proteomics c-terminal-peptides by nedwards on 2008-07-03 20:57:51 as **
  • A new method for C-terminal sequence analysis in the proteomic era
    Nature Methods, Vol. 2, No. 3. (17 February 2005), pp. 193-200.
    by Bart Samyn, Kjell Sergeant, Pedro Castanheira, Carlos Faro, Jozef V Van Beeumen
    posted to proteomics c-terminal-peptides by nedwards on 2008-07-03 20:51:30 as **
  • Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
    Nature Biotechnology, Vol. 26, No. 6. (25 May 2008), pp. 685-694.
    by Oliver Schilling, Christopher M Overall
    posted to tandem-mass-spectrometry proteomics n-terminal-peptides by nedwards on 2008-07-03 20:48:14 as ** along with 1 person brianb
  • Proteases' prime targets revealed
    Nature Biotechnology, Vol. 26, No. 6., pp. 652-653.
    by Scott L Diamond, Doron Greenbaum
    posted to tandem-mass-spectrometry proteomics n-terminal-peptides by nedwards on 2008-07-03 20:47:24 as **
  • notes Reliable automatic protein identification from matrix-assisted laser desorption/ionization mass spectrometric peptide fingerprints
    Electrophoresis, Vol. 20, No. 18. (1999), pp. 3521-3526.
    by Peter Berndt, Uwe Hobohm, Hanno Langen
    posted to proteomics peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 15:21:23 as **
  • Chemical Noise in Mass Spectrometry
    Spectroscopy, Vol. 17, No. 10. (October 2002)
    by Kenneth L Busch
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 15:11:39 as **
  • Masses in Mass Spectrometry: Balancing the Analytical Scales
    Spectroscopy, Vol. 19, No. 11. (November 2004), pp. 32-34.
    by Kenneth L Busch
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 15:09:55 as **
  • Debating Resolution and Mass Accuracy
    LCGC North America, Vol. 22, No. 2. (February 2004), pp. 118-130.
    by Michael P Balogh
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 15:04:49 as **
  • A Mathematical Approach to Error Reduction in Mass Spectrometry
    Spectroscopy (2 May 2005)
    by Ming Gu, Yongdong Wang, Don Kuehl
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 15:01:38 as **
  • Automated interpretation of mass spectra of complex mixtures by matching of isotope peak distributions
    Rapid Communications in Mass Spectrometry, Vol. 18, No. 20. (2004), pp. 2465-2472.
    by Jorge Fernández-De-Cossio, Luis J Gonzalez, Yoshinori Satomi, Lazaro Betancourt, Yassel Ramos, Vivian Huerta, Vladimir Besada, Gabriel Padron, Naoto Minamino, Toshifumi Takao
    posted to proteomics peak-detection mass-spectrometry isotope-label isotope-cluster-modeling by nedwards on 2008-06-16 14:56:12 as **
  • An automated method for the analysis of stable isotope labeling data in proteomics.
    Journal of the American Society for Mass Spectrometry, Vol. 16, No. 7. (July 2005), pp. 1181-1191.
    by X Zhang, W Hines, J Adamec, JM Asara, S Naylor, FE Regnier
    posted to proteomics peak-detection mass-spectrometry isotope-label isotope-cluster-modeling by nedwards on 2008-06-16 14:54:17 as **
  • Mass spectrometry-based proteomics turns quantitative.
    Nat Chem Biol, Vol. 1, No. 5. (October 2005), pp. 252-262.
    by SE Ong, M Mann
    posted to proteomics protein-quantitation mass-spectrometry isotope-label by nedwards on 2008-06-16 14:46:05 as ** along with 1 person balabu
  • Automated assignment of charge states from resolved isotopic peaks for multiply charged ions
    Journal of the American Society for Mass Spectrometry, Vol. 6, No. 1. (January 1995), pp. 52-56.
    by Michael W Senko, Steven C Beu, Fred W Mclafferty
    posted to peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:44:34 as **
  • Estimating the Precision of Exact Mass Measurements on an Orthogonal Time-of-Flight Mass Spectrometer
    Anal. Chem., Vol. 73, No. 3. (1 February 2001), pp. 715-719.
    by KF Blom
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 14:41:30 as **
  • Exact Mass Measurement of Polar Organic Molecules at Low Resolution Using Electrospray Ionization and a Quadrupole Mass Spectrometer
    Anal. Chem., Vol. 68, No. 20. (15 October 1996), pp. 3561-3569.
    by AN Tyler, E Clayton, BN Green
    posted to peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:40:13 as **
  • notes Proteolytic 18O Labeling for Comparative Proteomics: Evaluation of Endoprotease Glu-C as the Catalytic Agent
    J. Proteome Res., Vol. 1, No. 1. (21 February 2002), pp. 27-33.
    by KJ Reynolds, X Yao, C Fenselau
    posted to proteomics mass-spectrometry isotope-label isotope-cluster-modeling by nedwards on 2008-06-16 14:37:49 as **
  • Rapid Calculation of Isotope Distributions
    Anal. Chem., Vol. 67, No. 15. (1995), pp. 2699-2704.
    by Alan L Rockwood, Steven L Van Orden, Richard D Smith
    posted to peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:33:23 as **
  • Isotopic Distributions in Mass Spectra of Large Molecules
    Anal. Chem., Vol. 55, No. 2. (1983), pp. 353-356.
    by James Yergey, David Heller, Gordon Hansen, Robert J Cotter, Catherine Fenselau
    posted to proteomics peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:24:31 as **
  • A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra
    Journal of the American Society for Mass Spectrometry, Vol. 9, No. 3. (March 1998), pp. 225-233.
    by Zhongqi Zhang, Alan G Marshall
    posted to peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:18:17 as **
  • Automated deconvolution and deisotoping of electrospray mass spectra
    Journal of Mass Spectrometry, Vol. 37, No. 2. (2002), pp. 223-229.
    by Marco Wehofsky, Ralf Hoffmann
    posted to proteomics peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:16:54 as **
  • notes Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection
    Electrophoresis, Vol. 20, No. 18. (1999), pp. 3535-3550.
    by Robin Gras, Markus Müller, Elisabeth Gasteiger, Steven Gay, Pierre-Alain Binz, William Bienvenut, Christine Hoogland, Jean-Charles Sanchez, Amos Bairoch, Denis F Hochstrasser, Ron D Appel
    posted to proteomics peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:16:07 as **
  • A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system
    PROTEOMICS, Vol. 5, No. 13. (2005), pp. 3343-3352.
    by David e, Rork Kuick, Hong Wang, Vladimir Galchev, Bin Deng, Rong Zhao, John Tra, Michael r, Ravi Amunugama, David Allen, Angela k, John r, Philip Andrews, Gilbert s, Samir m
    posted to no-tag by nedwards on 2008-06-13 17:14:13 as **
  • Intact-protein-based High-resolution Three-dimensional Quantitative Analysis System for Proteome Profiling of Biological Fluids
    Mol Cell Proteomics, Vol. 4, No. 5. (1 May 2005), pp. 618-625.
    by Hong Wang, Shawn G Clouthier, Vladimir Galchev, David E Misek, Ulrich Duffner, Chang-Ki Min, Rong Zhao, John Tra, Gilbert S Omenn, James L Ferrara, Samir M Hanash
    posted to no-tag by nedwards on 2008-06-13 17:12:41 as **
  • Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes.
    J Proteome Res, Vol. 6, No. 9. (September 2007), pp. 3558-3565.
    by V Faca, SJ Pitteri, L Newcomb, V Glukhova, D Phanstiel, A Krasnoselsky, Q Zhang, J Struthers, H Wang, J Eng, M Fitzgibbon, M McIntosh, S Hanash
    posted to no-tag by nedwards on 2008-06-13 17:08:18 as ** along with 1 person jyuh
  • Absolute Quantification of Proteins by LCMSE: A Virtue of Parallel ms Acquisition
    Mol Cell Proteomics, Vol. 5, No. 1. (1 January 2006), pp. 144-156.
    by Jeffrey C Silva, Marc V Gorenstein, Guo-Zhong Li, Johannes P Vissers, Scott J Geromanos
    posted to proteomics protein-quantitation mass-spectrometry by nedwards on 2008-06-09 15:13:13 as ** along with 1 person olberd
  • Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein
    Mol Cell Proteomics, Vol. 4, No. 9. (1 September 2005), pp. 1265-1272.
    by Yasushi Ishihama, Yoshiya Oda, Tsuyoshi Tabata, Toshitaka Sato, Takeshi Nagasu, Juri Rappsilber, Matthias Mann
    posted to tandem-mass-spectrometry proteomics protein-quantitation-statistics protein-quantitation by nedwards on 2008-06-09 15:04:19 as **
  • A Biological Atlas of Functional Maps
    Cell, Vol. 104, No. 3. (9 February 2001), pp. 333-339.
    by Marc Vidal
    posted to systems-biology by nedwards on 2008-05-09 16:52:32 as ** along with 1 person mingzhi
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to systems-biology protein-protein-interactions by nedwards on 2008-05-09 16:38:15 as ** along with 35 people sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor kengg pbull jago Ema gtgt15 hryk i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-09 16:37:35 as ** along with 11 people and 2 groups jo_davies maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur GeschwindLab Indigene
  • GeneRank: Using search engine technology for the analysis of microarray experiments
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Julie Morrison, Rainer Breitling, Desmond Higham, David Gilbert
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-09 15:12:53 as ** along with 1 person jiny
  • CGI: a new approach for prioritizing genes by combining gene expression and proteinprotein interaction data
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 215-221.
    by Ma, Xiaotu, Lee, Hyunju, Sun, Fengzhu
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-08 14:07:28 as ** along with 1 person jiny
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-08 14:06:02 as ** along with 8 people carlk paolomarcatili gurkanbebek gespim grahamc cjeans iris_2001 kintoki
  • Proteomic strategies for rapid characterization of micro-organisms
    European Journal of Mass Spectrometry, Vol. 13, No. 1. (2007), pp. 35-39.
    by C Fenselau, S Russell, S Swatkoski, N Edwards
    posted to proteomics microorganism-identification mass-spectrometry bacillus by nedwards on 2008-05-05 16:04:15 as **
  • Efficient decoding algorithms for generalized hidden Markov model gene finders.
    BMC Bioinformatics, Vol. 6 (2005)
    by WH Majoros, M Pertea, AL Delcher, SL Salzberg
    posted to gene-finders by nedwards on 2008-05-02 21:35:43 as ** along with 2 people alexl mdimon
  • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    Mol Biol Evol, Vol. 12, No. 5. (1 September 1995), pp. 921-927.
    by L Excoffier, M Slatkin
    posted to phasing haplotypes by nedwards on 2008-05-02 21:34:38 as **
  • Observation ofEscherichia coliRibosomal Proteins and Their Posttranslational Modifications by Mass Spectrometry
    Analytical Biochemistry, Vol. 269, No. 1. (10 April 1999), pp. 105-112.
    by Randy J Arnold, James P Reilly
    posted to microorganism-identification mass-spectrometry by nedwards on 2008-05-02 21:24:26 as **
  • Combinatorial Problems Arising in SNP and Haplotype Analysis
    Discrete Mathematics and Theoretical Computer Science (2003), pp. 26-47.
    by Bjarni Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
    posted to phasing haplotypes by nedwards on 2008-05-02 18:57:12 as **
  • Dependence network modeling for biomarker identification
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 198-206.
    by Qiu, Peng, Wang, Z Jane, Liu, KJ Ray, Hu, Zhang-Zhi, Wu, H Cathy
    posted to systems-biology by nedwards on 2008-05-02 15:12:02 as **
  • Ensemble dependence model for classification and prediction of cancer and normal gene expression data
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3114-3121.
    by Peng Qiu, Jane Z Wang, Ray KJ Liu
    posted to systems-biology correlation by nedwards on 2008-05-02 14:56:33 as **
  • Gene expression profiling predicts clinical outcome of breast cancer.
    Nature, Vol. 415, No. 6871. (31 January 2002), pp. 530-536.
    by LJ van 't Veer, H Dai, MJ van de Vijver, YD He, AA Hart, M Mao, HL Peterse, K van der Kooy, MJ Marton, AT Witteveen, GJ Schreiber, RM Kerkhoven, C Roberts, PS Linsley, R Bernards, SH Friend
    posted to systems-biology gene-expression data-integration breast-cancer by nedwards on 2008-04-29 18:26:04 as ** along with 12 people and 1 group jo_davies jfr tuck bedo giovanni frohike Ao_Li2007 lyndon macavity1g winterschlaefer Lara waghsk GeschwindLab
  • The Gene Expression Response of Breast Cancer to Growth Regulators: Patterns and Correlation with Tumor Expression Profiles
    Cancer Res, Vol. 63, No. 21. (1 November 2003), pp. 7158-7166.
    by Heather E Cunliffe, Markus Ringner, Sven Bilke, Robert L Walker, Jennifer M Cheung, Yidong Chen, Paul S Meltzer
    posted to systems-biology gene-expression data-integration breast-cancer by nedwards on 2008-04-29 18:24:39 as **
  • Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome
    J. Proteome Res. (18 April 2008)
    by Alexei L Krasnoselsky, Vitor M Faca, Sharon J Pitteri, Qing Zhang, Samir M Hanash
    posted to tandem-mass-spectrometry proteomics protein-isoforms by nedwards on 2008-04-25 15:58:47 as **
  • Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications
    J. Proteome Res. (19 April 2008)
    by Xiuxia Du, Feng Yang, Nathan P Manes, David L Stenoien, Matthew E Monroe, Joshua N Adkins, David J States, Samuel O Purvine, Ii Camp, Richard D Smith
    posted to tandem-mass-spectrometry proteomics phosphorylation phosphopeptide peptide-identification-statistics by nedwards on 2008-04-25 15:56:45 as ** along with 2 people neils brianb
  • A statistical framework for genomic data fusion.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635.
    by GR Lanckriet, TD De Bie, N Cristianini, MI Jordan, WS Noble
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:52:51 as ** along with 5 people ptrobajo carlk tmmurali jfr mbeautru
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:52:24 as ** along with 17 people and 3 groups brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor athleem kdl Bioinformatics JJJ
  • A data integration methodology for systems biology: Experimental verification
    PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307.
    by Daehee Hwang, Jennifer J Smith, Deena M Leslie, Andrea D Weston, Alistair G Rust, Stephen Ramsey, Pedro de Atauri, Andrew F Siegel, Hamid Bolouri, John D Aitchison, Leroy Hood
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:51:56 as ** along with 10 people and 2 groups Retchless tmmurali dragonrez okarsligil lfriedl lyongu eweaver wnpx mbeautru GeeSharpMinor kdl Bioinformatics
  • Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2910-2917.
    by Sangeeta B English, Atul J Butte
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:50:45 as ** along with 3 people tmmurali jfr barriot
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
    posted to data-integration by nedwards on 2008-04-17 16:50:01 as ** along with 8 people and 1 group brianb jyuh tmmurali dwf frohike cjeans shikin blackm0k Bioinformatics
  • Role of Cadmium in the Regulation of AR Gene Expression and Activity
    Endocrinology, Vol. 143, No. 1. (1 January 2002), pp. 263-275.
    by Mary B Martin, James H Voeller, Edward P Gelmann, Jianming Lu, Elly-Gerald Stoica, Elijah J Hebert, Ronald Reiter, Baljit Singh, Mark Danielsen, Elizabeth Pentecost, Adriana Stoica
    posted to androgen cadmium by nedwards on 2008-04-17 15:52:54 as **
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