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de rdiaz library [294 articles]

Articles dernièrement stockés dans la bibliothèque de rdiaz .
  • CANCER: The Metastasis Cascade
    Science, Vol. 321, No. 5897. (26 September 2008), pp. 1785-1787.
    by Christoph A Klein
    posted to no-tag by rdiaz on 2008-10-03 17:48:39 as ** along with 3 people and 2 groups SaraNasser Zephyrus giovenko Roswell Cancer Crosstalk Breast Cancer Reading Club
  • PROTEOMICS: Will Biomarkers Take Off at Last?
    Science, Vol. 321, No. 5897. (26 September 2008), 1760.
    by Robert F Service
    posted to no-tag by rdiaz on 2008-10-03 17:42:07 as **
  • Analysis of copy number variation using quantitative interspecies competitive PCR
    Nucl. Acids Res., Vol. 36, No. 17. (1 October 2008), e112.
    by Nigel M Williams, Hywel Williams, Elisa Majounie, Nadine Norton, Beate Glaser, Huw R Morris, Michael J Owen, Michael C O'Donovan
    posted to no-tag by rdiaz on 2008-10-03 17:29:00 as **
  • A probabilistic generative model for GO enrichment analysis
    Nucl. Acids Res. (1 August 2008), gkn434.
    by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J Nau, Ziv Bar-Joseph
    posted to no-tag by rdiaz on 2008-10-03 17:28:27 as ** along with 6 people paszkows barriot waszak tmmurali raiyar jandot
  • Advanced Genomic Data Mining
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000121.
    by Xosé M Fernández-Suárez, Ewan Birney
    posted to no-tag by rdiaz on 2008-10-03 17:26:16 as ** along with 8 people and 1 group cisevol aramesh2 sunhwan druvus mitko jandot jameswasmuth dullhunk BergmanLab
  • Higher criticism thresholding: Optimal feature selection when useful features are rare and weak
    Proceedings of the National Academy of Sciences, Vol. 105, No. 39. (2008), pp. 14790-14795.
    by David Donoho, Jiashun Jin
    posted to no-tag by rdiaz on 2008-10-03 17:18:10 as ** along with 4 people sschurer phoenixzxl briordan sg45653
  • Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays
    Genome Biology, Vol. 9 (16 September 2008), R136.
    by Johan Staaf, David Lindgren, Johan Vallon-Christersson, Anders Isaksson, Hanna Goransson, Gunnar Juliusson, Richard Rosenquist, Mattias Hoglund, Ake Borg, Markus Ringner
    posted to no-tag by rdiaz on 2008-10-03 17:11:46 as **
  • Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges
    Nat Rev Genet, Vol. 9, No. 9. (2008), pp. 678-688.
    by Lincoln D Stein
    posted to no-tag by rdiaz on 2008-10-03 17:09:35 as ** along with 20 people and 4 groups nuin bmaust jyuh carolh12 ilya alaninmcr druvus srp33 dullhunk tharris stajich mrochman dansullivanblk neils jandot GustavoLacerda jago fgibson thomaskelder sjcockell Berkeley Mycology Global_health_enterprise_architecture Knowledge_Economy_Reform kpa-resources
  • Identifying differentially-expressed subnetworks with MMG
    Bioinformatics (25 September 2008), btn499.
    by Josselin Noirel, Guido Sanguinetti, Phillip C Wright
    posted to no-tag by rdiaz on 2008-10-03 17:04:52 as **
  • BNFinder: Exact and efficient method for learning Bayesian networks
    Bioinformatics (30 September 2008), btn505.
    by Bartek Wilczynski, Norbert Dojer
    posted to no-tag by rdiaz on 2008-10-03 17:00:16 as ** along with 3 people grahamc phoenixzxl renatomilani
  • Bayesian learning of biological pathways on genomic data assimilation
    Bioinformatics (25 September 2008), btn483.
    by Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi
    posted to no-tag by rdiaz on 2008-10-03 16:59:42 as ** along with 2 people phoenixzxl renatomilani
  • Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs.
    Nature genetics (7 September 2008)
    by Joshua M M Korn, Finny G G Kuruvilla, Steven A A McCarroll, Alec Wysoker, James Nemesh, Simon Cawley, Earl Hubbell, Jim Veitch, Patrick J J Collins, Katayoon Darvishi, Charles Lee, Marcia M M Nizzari, Stacey B B Gabriel, Shaun Purcell, Mark J J Daly, David Altshuler
    posted to no-tag by rdiaz on 2008-09-29 15:09:50 as ** along with 5 people caseybrown dakelley djkt daed vplagnol
  • Systematic assessment of copy number variant detection via genome-wide SNP genotyping.
    Nature genetics (7 September 2008)
    by Gregory M M Cooper, Troy Zerr, Jeffrey M M Kidd, Evan E E Eichler, Deborah A A Nickerson
    posted to no-tag by rdiaz on 2008-09-29 15:08:44 as ** along with 6 people and 1 group waszak caseybrown Zephyrus psique misonneh jyuh Roswell Cancer Crosstalk
  • A robust statistical method for case-control association testing with copy number variation.
    Nature genetics (7 September 2008)
    by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, Richard Redon, Jonathan Marchini, David Clayton, Matthew E E Hurles
    posted to no-tag by rdiaz on 2008-09-29 15:08:42 as ** along with 9 people and 1 group waszak caseybrown Zephyrus dakelley buyske misonneh djkt Stew jyuh Roswell Cancer Crosstalk
  • Integrated detection and population-genetic analysis of SNPs and copy number variation.
    Nature genetics (7 September 2008)
    by Steven A A McCarroll, Finny G G Kuruvilla, Joshua M M Korn, Simon Cawley, James Nemesh, Alec Wysoker, Michael H H Shapero, Paul I W I de Bakker, Julian B B Maller, Andrew Kirby, Amanda L L Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J J Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W W Jones, Rich Rava, Mark J J Daly, Stacey B B Gabriel, David Altshuler
    posted to no-tag by rdiaz on 2008-09-29 15:06:03 as ** along with 11 people and 1 group waszak caseybrown rsantana Zephyrus psique jbsaltz Ema misonneh djkt daed jyuh Roswell Cancer Crosstalk
  • R/parallel - speeding up bioinformatics analysis with R
    BMC Bioinformatics, Vol. 9 (22 September 2008), 390.
    by Gonzalo Vera, Ritsert C Jansen, Remo L Suppi
    posted to no-tag by rdiaz on 2008-09-23 09:12:40 as read along with 14 people and 1 group dakelley chad_davis ptrobajo pengchy shikin robertlischke chrisamiller cisevol druvus renatomilani nuin GeeSharpMinor neils jandot BergmanLab
  • The design <I>versus</I> the analysis of observational studies for causal effects: parallels with the design of randomized trials
    Statistics in Medicine, Vol. 26, No. 1. (2007), pp. 20-36.
    by Donald B Rubin
    posted to no-tag by rdiaz on 2008-09-16 12:47:06 as ** along with 2 people jyuh soc597
  • An improved method for detecting and delineating genomic regions with altered gene expression in cancer
    Genome Biology, Vol. 9, No. 1. (2008)
    by Bjorn Nilsson, Mikael Johansson, Anders Heyden, Sven Nelander, Thoas Fioretos
    posted to no-tag by rdiaz on 2008-09-15 17:25:08 as ** along with 4 people natstreet barriot ptrobajo jfr
  • Commentary: Counterfactuals: help or hindrance?
    Int. J. Epidemiol., Vol. 31, No. 2. (1 April 2002), pp. 429-430.
    by AP Dawid
    posted to no-tag by rdiaz on 2008-09-15 10:53:06 as **
  • Commentary: Estimating causal effects
    Int. J. Epidemiol., Vol. 31, No. 2. (1 April 2002), pp. 434-435.
    by Glenn Shafer
    posted to no-tag by rdiaz on 2008-09-15 10:53:04 as **
  • Epidemiologic measures and policy formulation: lessons from potential outcomes
    Emerging Themes in Epidemiology, Vol. 2, No. 1. (2005)
    by Sander Greenland
    posted to no-tag by rdiaz on 2008-09-15 10:49:24 as **
  • An overview of relations among causal modelling methods.
    Int J Epidemiol, Vol. 31, No. 5. (October 2002), pp. 1030-1037.
    by S Greenland, B Brumback
    posted to no-tag by rdiaz on 2008-09-15 10:46:44 as ** along with 1 person jyuh
  • Causal criteria and counterfactuals; nothing more (or less) than scientific common sense
    Emerging Themes in Epidemiology, Vol. 3 (26 May 2006), 5.
    by Carl V Phillips, Karen J Goodman
    posted to no-tag by rdiaz on 2008-09-15 10:44:11 as **
  • The Bradford Hill considerations on causality: a counterfactual perspective
    Emerging Themes in Epidemiology, Vol. 2 (03 November 2005), 11.
    by Michael Höfler
    posted to no-tag by rdiaz on 2008-09-15 10:43:56 as **
  • Chromosomal Abnormalities in Cancer
    N Engl J Med, Vol. 359, No. 7. (14 August 2008), pp. 722-734.
    by Stefan Frohling, Hartmut Dohner
    posted to no-tag by rdiaz on 2008-09-05 15:47:03 as read along with 1 person ealloza
  • Copy-number analysis goes more than skin deep
    Nature Genetics, Vol. 40, No. 1., pp. 5-6.
    by Steven A Mccarroll
    posted to no-tag by rdiaz on 2008-06-24 13:57:55 as **
  • Estimating an oncogenetic tree when false negatives and positives are present
    Mathematical Biosciences, Vol. 176, No. 2. (April 2002), pp. 219-236.
    by Aniko Szabo, Kenneth Boucher
    posted to no-tag by rdiaz on 2007-12-26 13:17:05 as **
  • Chromosome abnormalities in ovarian adenocarcinoma: III. Using breakpoint data to infer and test mathematical models for oncogenesis
    Genes, Chromosomes and Cancer, Vol. 28, No. 1. (2000), pp. 106-120.
    by Richard Simon, Richard Desper, Christos H Papadimitriou, Amy Peng, David S Alberts, Raymond Taetle, Jeffrey M Trent, Alejandro A Schäffer
    posted to no-tag by rdiaz on 2007-12-26 13:16:47 as **
  • Weighted clustering of called array CGH data.
    Biostatistics (22 December 2007)
    by Wessel N N Van Wieringen, Mark A A Van De Wiel, Bauke Ylstra
    posted to no-tag by rdiaz on 2007-12-26 10:54:49 as **
  • Construction of tree models for pathogenesis of nasopharyngeal carcinoma.
    Genes Chromosomes Cancer, Vol. 40, No. 4. (August 2004), pp. 307-315.
    by Z Huang, R Desper, AA Schäffer, Z Yin, X Li, K Yao
    posted to no-tag by rdiaz on 2007-12-26 10:51:45 as **
  • A Tumor Progression Model for Hepatocellular Carcinoma: Bioinformatic Analysis of Genomic Data
    Gastroenterology, Vol. 131, No. 4. (October 2006), pp. 1262-1270.
    by Terence C Poon, Nathalie Wong, Paul B Lai, Magnus Rattray, Philip J Johnson, Joseph J Sung
    posted to no-tag by rdiaz on 2007-12-26 10:50:37 as **
  • Inferring a tumor progression model for neuroblastoma from genomic data.
    J Clin Oncol, Vol. 23, No. 29. (10 October 2005), pp. 7322-7331.
    by S Bilke, QR Chen, F Westerman, M Schwab, D Catchpoole, J Khan
    posted to no-tag by rdiaz on 2007-12-26 10:38:13 as **
  • A comprehensive continuous-time model for the appearance of CGH signal due to chromosomal missegregations during mitosis.
    Math Biosci, Vol. 197, No. 1. (September 2005), pp. 67-87.
    by R Desper, MJ Difilippantonio, T Ried, AA Schäffer
    posted to no-tag by rdiaz on 2007-12-26 10:37:50 as **
  • DPRml: distributed phylogeny reconstruction by maximum likelihood.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 969-974.
    by TM Keane, TJ Naughton, SA Travers, JO McInerney, GP McCormack
    posted to no-tag by rdiaz on 2007-12-26 10:34:20 as ** along with 1 person knaseanka
  • New probabilistic network models and algorithms for oncogenesis.
    J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 853-865.
    by M Hjelm, M Höglund, J Lagergren
    posted to no-tag by rdiaz on 2007-12-26 10:33:26 as ** along with 1 person jfr
  • SDM: A Fast Distance-Based Approach for (Super)Tree Building in Phylogenomics
    Systematic Biology, Vol. 55, No. 5. (October 2006), pp. 740-755.
    by Criscuolo, Alexis, Berry, Vincent, Douzery, Emmanuel, Gascuel, Olivier
    posted to no-tag by rdiaz on 2007-12-26 10:32:29 as **
  • Using PQ structures for genomic rearrangement phylogeny.
    J Comput Biol, Vol. 13, No. 10. (December 2006), pp. 1685-1700.
    by L Parida
    posted to no-tag by rdiaz on 2007-12-26 10:31:08 as **
  • Construction and analysis of tree models for chromosomal classification of diffuse large B-cell lymphomas.
    World J Gastroenterol, Vol. 13, No. 11. (21 March 2007), pp. 1737-1742.
    by HY Jiang, ZX Huang, XF Zhang, R Desper, T Zhao
    posted to no-tag by rdiaz on 2007-12-26 10:30:01 as **
  • Maximum likelihood estimation of oncogenetic tree models.
    Biostatistics, Vol. 5, No. 4. (October 2004), pp. 545-556.
    by A von Heydebreck, B Gunawan, L Füzesi
    posted to no-tag by rdiaz on 2007-12-26 10:23:16 as **
  • The order of genetic events associated with colorectal cancer progression inferred from meta-analysis of copy number changes.
    Genes Chromosomes Cancer, Vol. 45, No. 1. (January 2006), pp. 31-41.
    by CB Diep, K Kleivi, FR Ribeiro, MR Teixeira, OC Lindgjaerde, RA Lothe
    posted to no-tag by rdiaz on 2007-12-26 10:22:23 as ** along with 1 person jfr
  • Construction of evolutionary tree models for nasopharyngeal carcinoma using comparative genomic hybridization data.
    Cancer Genet Cytogenet, Vol. 168, No. 2. (15 July 2006), pp. 105-108.
    by L Shih-Hsin Wu
    posted to no-tag by rdiaz on 2007-12-26 10:21:01 as **
  • An oncogenetic tree model in gastrointestinal stromal tumours (GISTs) identifies different pathways of cytogenetic evolution with prognostic implications.
    J Pathol, Vol. 211, No. 4. (March 2007), pp. 463-470.
    by B Gunawan, A von Heydebreck, B Sander, HJ Schulten, F Haller, C Langer, T Armbrust, M Bollmann, S Gasparov, D Kovac, L Füzesi
    posted to no-tag by rdiaz on 2007-12-26 10:20:24 as **
  • Oncogenetic tree models based on cytogenetic data: new insights into the development of epithelial tumors of the thymus.
    Cancer Genet Cytogenet, Vol. 158, No. 1. (1 April 2005), pp. 75-80.
    by RJ Rieker, R Penzel, S Aulmann, H Blaeker, A Morresi-Hauf, E Hecker, HF Otto, G Mechtersheimer, A von Heydebreck
    posted to no-tag by rdiaz on 2007-12-26 10:14:49 as ** along with 1 person ealloza
  • Inferring tree models for oncogenesis from comparative genome hybridization data.
    J Comput Biol, Vol. 6, No. 1. (1999), pp. 37-51.
    by R Desper, F Jiang, OP Kallioniemi, H Moch, CH Papadimitriou, AA Schäffer
    posted to no-tag by rdiaz on 2007-12-26 10:04:19 as ** along with 1 person archroad
  • Graph Models of Oncogenesis with an Application to Melanoma
    Journal of Theoretical Biology, Vol. 212, No. 4. (21 October 2001), pp. 535-548.
    by Michael D Radmacher, Richard Simon, Richard Desper, Raymond Taetle, Alejandro A Schaffer, Mark A Nelson
    posted to no-tag by rdiaz on 2007-12-26 10:04:11 as **
  • High throughput screening of methylation status of genes in prostate cancer using an oligonucleotide methylation array
    Carcinogenesis, Vol. 26, No. 2. (February 2005), 471.
    by Yan P Yu, Shirish Paranjpe, Joel Nelson, Sydney Finkelstein, Baoguo Ren, Demetrius Kokkinakis, George Michalopoulos, Jian-Hua Luo
    posted to no-tag by rdiaz on 2007-12-21 15:55:46 as **
  • Clustering by Passing Messages Between Data Points.
    Science (11 January 2007)
    by Brendan J J Frey, Delbert Dueck
    posted to no-tag by rdiaz on 2007-12-20 18:21:23 as ** along with 26 people and 2 groups doitian kuhn xtizon jfr jmeppley stevedebacker arjen sterovetta sdvillal nickluscombe ianturton macle bluto rsantana grahamc ccr hexuming worldsun dimatura paulovn daniel51 matjes johnkork XIANG iris_2001 soundray EBI-regulation ParkinsonLab_at_MaRS
  • Microarray gene expression data with linked survival phenotypes: diffuse large-B-cell lymphoma revisited
    Biostatistics, Vol. 7, No. 2. (April 2006), pp. 268-285.
    by Segal, R Mark
    posted to no-tag by rdiaz on 2007-11-30 14:11:38 as ** along with 2 people jfr djkt
  • Supervised group Lasso with applications to microarray data analysis
    BMC Bioinformatics, Vol. 8 (22 February 2007), 60.
    by Shuangge Ma, Xiao Song, Jian Huang
    posted to no-tag by rdiaz on 2007-11-30 14:06:37 as read along with 2 people jfr ghattem
  • Model-based boosting in high dimensions
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2828-2829.
    by Hothorn, Torsten, Buhlmann, Peter
    posted to no-tag by rdiaz on 2007-11-23 10:27:51 as **
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