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de roys library [210 articles]

Articles dernièrement stockés dans la bibliothèque de roys .
  • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation : Article : Nature Reviews Genetics
    posted to yeast stress condition_specific_response by roys on 2008-07-04 05:23:16 as **
  • The environmental contribution to gene expression profiles : Article : Nature Reviews Genetics
    posted to condition_specific_response by roys on 2008-07-02 05:20:36 as **
  • Inferring differentiation pathways from gene expression
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i156-164.
    by Ivan G Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep
    posted to condition_specific_nw by roys on 2008-06-27 18:03:05 as ** along with 2 people balicea renatomilani
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to nw_modularity network_inference causality by roys on 2008-06-26 18:39:04 as ** along with 8 people djkt marck jyuh realzhang kengg tmmurali ptrobajo maralena
  • A probabilistic functional network of yeast genes.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558.
    by I Lee, SV Date, AT Adai, EM Marcotte
    posted to nw_modularity networks clustering by roys on 2008-06-26 07:13:00 as ** along with 14 people and 3 groups balicea kintoki ellakat irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant svdate dbk-lab kdl EBI-regulation
  • Modular organization of cellular networks
    Proceedings of the National Academy of Sciences, Vol. 100, No. 3. (4 February 2003), pp. 1128-1133.
    by Alexander W Rives, Timothy Galitski
    posted to nw_modularity clustering by roys on 2008-06-26 06:43:00 as ** along with 6 people ellakat carlk jotwin karfunkel Evangelia stefanoallesina
  • Multistart Algorithms for MEG Empirical Data Analysis Reliably Characterize Locations and Time Courses of Multiple Sources
    NeuroImage, Vol. 12, No. 2. (August 2000), pp. 159-172.
    by C Aine, M Huang, J Stephen, R Christner
    posted to neuroscience ca by roys on 2008-06-25 21:39:34 as **
  • Differentiability of simulated MEG hippocampal, medial temporal and neocortical temporal epileptic spike activity.
    Journal of clinical neurophysiology : official publication of the American Electroencephalographic Society, Vol. 22, No. 6. (December 2005), pp. 388-401.
    by JM Stephen, DM Ranken, CJ Aine, MP Weisend, JJ Shih
    posted to neuroscience ca by roys on 2008-06-25 21:19:46 as **
  • Aging: Compensation or maturation?
    NeuroImage, Vol. 32, No. 4. (1 October 2006), pp. 1891-1904.
    by Cheryl J Aine, Chad C Woodruff, Janice E Knoefel, John C Adair, David Hudson, Clifford Qualls, Jeremy Bockholt, Elaine Best, Sanja Kovacevic, Wayne Cobb, Denise Padilla, Blaine Hart, Julia M Stephen
    posted to neuroscience ca by roys on 2008-06-25 21:07:52 as **
  • Frequency-following and connectivity of different visual areas in response to contrast-reversal stimulation.
    Brain topography, Vol. 18, No. 4. (2006), pp. 257-272.
    by JM Stephen, DF Ranken, CJ Aine
    posted to neuroscience ca by roys on 2008-06-25 20:46:49 as **
  • Paving the way for cross-site pooling of magnetoencephalography (MEG) data
    International Congress Series, Vol. 1300 (June 2007), pp. 615-618.
    by MP Weisend, FM Hanlon, R Montaño, SP Ahlfors, AC Leuthold, D Pantazis, JC Mosher, AP Georgopoulos, MS Hämäläinen, CJ Aine
    posted to neuroscience ca by roys on 2008-06-25 20:34:59 as **
  • Modelling the magnetic signature of neuronal tissue
    NeuroImage, Vol. 37, No. 1. (1 August 2007), pp. 137-148.
    by KB Blagoev, B Mihaila, BJ Travis, LB Alexandrov, AR Bishop, D Ranken, S Posse, C Gasparovic, A Mayer, CJ Aine, I Ulbert, M Morita, W Müller, J Connor, E Halgren
    posted to neuroscience ca by roys on 2008-06-25 19:16:20 as **
  • 3D comparison of hippocampal atrophy in amnestic mild cognitive impairment and Alzheimer's disease.
    Brain, Vol. 129, No. Pt 11. (November 2006), pp. 2867-2873.
    by LG Apostolova, ID Dinov, RA Dutton, KM Hayashi, AW Toga, JL Cummings, PM Thompson
    posted to neuroscience mental_diseases by roys on 2008-06-24 23:50:40 as ** along with 1 person SinghalLab
  • Structural correlates of apathy in Alzheimer's disease.
    Dementia and geriatric cognitive disorders, Vol. 24, No. 2. (2007), pp. 91-97.
    by LG Apostolova, GG Akopyan, N Partiali, CA Steiner, RA Dutton, KM Hayashi, ID Dinov, AW Toga, JL Cummings, PM Thompson
    posted to neuroscience mental_diseases by roys on 2008-06-24 23:48:55 as **
  • The relationship between performance and fMRI signal during working memory in patients with schizophrenia, unaffected co-twins, and control subjects
    Schizophrenia Research, Vol. 89, No. 1-3. (January 2007), pp. 191-197.
    by Katherine H Karlsgodt, David C Glahn, Theo G van Erp, Sebastian Therman, Matti Huttunen, Marko Manninen, Jaakko Kaprio, Mark S Cohen, Jouko Lönnqvist, Tyrone D Cannon
    posted to neuroscience mental_diseases by roys on 2008-06-24 22:43:41 as **
  • Dorsolateral prefrontal cortex activity during maintenance and manipulation of information in working memory in patients with schizophrenia.
    Archives of general psychiatry, Vol. 62, No. 10. (October 2005), pp. 1071-1080.
    by TD Cannon, DC Glahn, J Kim, TG Van Erp, K Karlsgodt, MS Cohen, KH Nuechterlein, S Bava, D Shirinyan
    posted to schizophrenia neuroscience by roys on 2008-06-24 22:22:42 as **
  • Progressive brain structural changes mapped as psychosis develops in 'at risk' individuals.
    Schizophrenia research (8 February 2008)
    by Daqiang Sun, Lisa Phillips, Dennis Velakoulis, Alison Yung, Patrick D D McGorry, Stephen J J Wood, Theo G M G van Erp, Paul M M Thompson, Arthur W W Toga, Tyrone D D Cannon, Christos Pantelis
    posted to neuroscience mental_diseases by roys on 2008-06-24 21:24:24 as **
  • Increased amygdala activation during mania: a functional magnetic resonance imaging study.
    The American journal of psychiatry, Vol. 162, No. 6. (June 2005), pp. 1211-1213.
    by L Altshuler, S Bookheimer, MA Proenza, J Townsend, F Sabb, A Firestine, G Bartzokis, J Mintz, J Mazziotta, MS Cohen
    posted to neuroscience mental_diseases by roys on 2008-06-24 21:13:55 as **
  • Dynamics of Gray Matter Loss in Alzheimer's Disease
    J. Neurosci., Vol. 23, No. 3. (1 February 2003), pp. 994-1005.
    by Paul M Thompson, Kiralee M Hayashi, Greig de Zubicaray, Andrew L Janke, Stephen E Rose, James Semple, David Herman, Michael S Hong, Stephanie S Dittmer, David M Doddrell, Arthur W Toga
    posted to neuroscience mental_diseases by roys on 2008-06-24 20:56:59 as ** along with 1 person jclau
  • Mapping adolescent brain change reveals dynamic wave of accelerated gray matter loss in very early-onset schizophrenia.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 20. (25 September 2001), pp. 11650-11655.
    by PM Thompson, C Vidal, JN Giedd, P Gochman, J Blumenthal, R Nicolson, AW Toga, JL Rapoport
    posted to neuroscience mental_diseases by roys on 2008-06-24 20:27:25 as **
  • Image segmentation by data-driven Markov chain Monte Carlo
    Transactions on Pattern Analysis and Machine Intelligence, Vol. 24, No. 5. (2002), pp. 657-673.
    by Zhuowen Tu, Song-Chun Zhu
    posted to neuroscience by roys on 2008-06-23 02:53:04 as ** along with 1 person qwermish
  • Rapid Inference on a novel AND/OR graph: Detection, Segmentation and Parsing of Articulated Deformable Objects in Cluttered Backgrounds
    (2007)
    by Yuanhao Chen, Long ( Zhu, Chenxi Lin, Alan Yuille
    posted to neuroscience inference by roys on 2008-06-23 02:45:05 as **
  • Multilevel segmentation and integrated bayesian model classification with an application to brain tumor segmentation.
    Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, Vol. 9, No. Pt 2. (2006), pp. 790-798.
    by JJ Corso, E Sharon, A Yuille
    posted to neuroscience by roys on 2008-06-23 02:25:06 as **
  • Unsupervised Learning of Probabilistic Grammar-Markov Models for Object Categories
    Pattern Analysis and Machine Intelligence, IEEE Transactions on (2008)
    by L Zhu, Y Chao, AL Yuille
    posted to neuroscience by roys on 2008-06-23 02:23:09 as **
  • Concurrent EEG/fMRI analysis by multiway Partial Least Squares
    NeuroImage, Vol. 22, No. 3. (July 2004), pp. 1023-1034.
    by Eduardo Martinez-Montes, Pedro A Valdes-Sosa, Fumikazu Miwakeichi, Robin I Goldman, Mark S Cohen
    posted to neuroscience by roys on 2008-06-23 01:50:40 as ** along with 1 person librain
  • Learning Generative Models via Discriminative Approaches
    Computer Vision and Pattern Recognition, 2007. CVPR '07. IEEE Conference on (2007), pp. 1-8.
    by Zhuowen Tu
    posted to neuroscience by roys on 2008-06-23 01:30:49 as **
  • Auto-context and Its Application to High-level Vision Tasks
    (2008)
    by Zhuowen Tu
    posted to neuroscience by roys on 2008-06-23 01:23:30 as **
  • Computational anatomical methods as applied to ageing and dementia.
    The British journal of radiology, Vol. 80 Spec No 2 (December 2007)
    by PM Thompson, LG Apostolova
    posted to neuroscience by roys on 2008-06-23 01:02:43 as **
  • Construction of a 3D probabilistic atlas of human cortical structures.
    Neuroimage, Vol. 39, No. 3. (1 February 2008), pp. 1064-1080.
    by DW Shattuck, M Mirza, V Adisetiyo, C Hojatkashani, G Salamon, KL Narr, RA Poldrack, RM Bilder, AW Toga
    posted to neuroscience imaging by roys on 2008-06-23 00:47:51 as ** along with 3 people soundray adick isami
  • Corrigendum to "Concurrent EEG/fMRI analysis by multiway partial least squares" [NeuroImage 22 (2004) 1023-1034]
    NeuroImage, Vol. 26, No. 3. (1 July 2005), pp. 973-973.
    by Eduardo Martínez-Montes, Pedro A Valdés-Sosa, Fumikazu Miwakeichi, Robin I Goldman, Mark S Cohen
    posted to neuroscience data_integration by roys on 2008-06-23 00:20:24 as **
  • notes Genetic Algorithms for Finite Mixture Model Based Voxel Classification in Neuroimaging
    Medical Imaging, IEEE Transactions on, Vol. 26, No. 5. (2007), pp. 696-711.
    by J Tohka, E Krestyannikov, ID Dinov, AM Graham, DW Shattuck, U Ruotsalainen, AW Toga
    posted to tokha07 by roys on 2008-06-22 21:24:10 as **
  • notes Joint Sulci Detection Using Graphical Models and Boosted Priors
    Information Processing in Medical Imaging (2007), pp. 98-109.
    by Yonggang Shi, Zhuowen Tu, Allan Reiss, Rebecca Dutton, Agatha Lee, Albert Galaburda, Ivo Dinov, Paul Thompson, Arthur Toga
    posted to neuroscience by roys on 2008-06-22 21:21:41 as **
  • Hamilton–Jacobi Skeleton on Cortical Surfaces
    Medical Imaging, IEEE Transactions on, Vol. 27, No. 5. (2008), pp. 664-673.
    by Y Shi, PM Thompson, I Dinov, AW Toga
    posted to neuroscience by roys on 2008-06-22 21:02:17 as ** along with 1 person xtizon
  • A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development.
    Dev Cell, Vol. 10, No. 6. (June 2006), pp. 797-807.
    by T Sandmann, LJ Jensen, JS Jakobsen, MM Karzynski, MP Eichenlaub, P Bork, EE Furlong
    posted to fly by roys on 2008-06-16 03:52:05 as ** along with 2 people balicea larsjuhljensen
  • A core transcriptional network for early mesoderm development in Drosophila melanogaster.
    Genes Dev, Vol. 21, No. 4. (15 February 2007), pp. 436-449.
    by T Sandmann, C Girardot, M Brehme, W Tongprasit, V Stolc, EE Furlong
    posted to fly by roys on 2008-06-16 03:51:52 as ** along with 4 people and 2 groups brant dpollard kengg gsrats EisenLab Plantandetc
  • Statistical significance for genomewide studies.
    Proc Natl Acad Sci U S A, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445.
    by JD Storey, R Tibshirani
    posted to gene_ontology fdr by roys on 2008-06-12 06:45:21 as ** along with 16 people and 1 group jyuh textoris RMGraze jen_drake hggr frohike schuylrp grahamc incovoma kynn sancho 7ofAnn nicholso shikin wirawan BrianTomasik Bioinformatics
  • Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering
    Genome Res. (25 April 2008), gr.073601.107.
    by Giusy Della Gatta, Mukesh Bansal, Alberto Ambesi-Impiombato, Dario Antonini, Caterina Missero, Diego di Bernardo
    posted to tfnet mammals gene_expression biological_networks by roys on 2008-06-09 17:06:13 as ** along with 1 person tmmurali
  • Context-Specific Metabolic Networks Are Consistent with Experiments
    PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000082.
    by Scott A Becker, Bernhard O Palsson
    posted to metabolic_nw condition_specific_nw by roys on 2008-06-08 02:58:02 as ** along with 1 person ptrobajo
  • Dynamic analysis of integrated signaling, metabolic, and regulatory networks.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by J Min Lee, EP Gianchandani, JA Eddy, JA Papin
    posted to signaling_nw regulatory_nw metabolic_nw data_integration biological_networks by roys on 2008-06-08 02:57:39 as ** along with 3 people Ema lymxz bootsy
  • Anticipatory Behavior Within Microbial Genetic Networks
    Science (8 May 2008), 1154456.
    by Ilias Tagkopoulos, Yir-Chung Liu, Saeed Tavazoie
    posted to ecoli biological_networks by roys on 2008-06-08 02:56:46 as ** along with 7 people and 2 groups stringertheory dbikard deanmalmgren jjray djkt skumagai brembs Centre de Recherches Interdisciplinaires Bacterial Genome Plasticity
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to gene_ontology by roys on 2008-06-08 02:54:13 as ** along with 18 people and 1 group marck capitall realzhang gjuggler A_Olympia fpattyn cmzmasek djkt renatomilani giovenko tmmurali cabbagesofdoom ptrobajo RamuAnandakrishnan carlk mariakmejia aheilbut jyuh logics of knowledge
  • Modularization of biochemical networks based on classification of Petri net t-invariants
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Eva G Belau, Falk Schreiber, Monika Heiner, Andrea Sackmann, Bjorn Junker, Stefanie Grunwald, Astrid Speer, Katja Winder, Ina Koch
    posted to petrinet biological_networks by roys on 2008-06-08 02:23:05 as ** along with 3 people and 1 group bootsy sobolevnrm maralena baker-group
  • The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes
    Science, Vol. 320, No. 5874. (18 April 2008), pp. 362-365.
    by Maureen E Hillenmeyer, Eula Fung, Jan Wildenhain, Sarah E Pierce, Shawn Hoon, William Lee, Michael Proctor, St, Mike Tyers, Daphne Koller, Russ B Altman, Ronald W Davis, Corey Nislow, Guri Giaever
    posted to yeast phenotype_correlation by roys on 2008-06-08 00:57:01 as ** along with 5 people and 1 group lp2 bala stajich tmmurali nfreed Berkeley Mycology
  • A system for generating transcription regulatory networks with combinatorial control of transcription.
    Bioinformatics (Oxford, England) (8 April 2008)
    by Sushmita Roy, Margaret Werner-Washburne, Terran Lane
    posted to no-tag by roys on 2008-06-06 07:03:24 as ** along with 2 people jyuh bootsy
  • SpringerLink - Resource Secured
    posted to markov_networks by roys on 2008-05-26 06:00:59 as **
  • Modular cell biology: retroactivity and insulation
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Domitilla Del Vecchio, Alexander J Ninfa, Eduardo D Sontag
    posted to modularity metabolic_nw by roys on 2008-05-24 17:06:40 as ** along with 5 people AbnerCYH austin margaritis rsantana pmendes
  • Differential Log Likelihood for Evaluating and Learning Gaussian Mixtures
    Neural Comp., Vol. 18, No. 2. (1 February 2005), pp. 430-445.
    by Marc M Hulle
    posted to information_theory by roys on 2008-05-20 06:56:47 as **
  • Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles
    Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1359-1366.
    by Anindya Bhattacharya, Rajat K De
    posted to gene_expression clustering by roys on 2008-05-19 16:40:42 as ** along with 2 people barriot jyuh
  • Fast Network Component Analysis (FastNCA) for gene regulatory network reconstruction from microarray data.
    Bioinformatics (Oxford, England) (9 April 2008)
    by Chunqi Chang, Zhi Ding, Yeung Sam S Hung, Peter Chin Wan C Fung
    posted to network_inference by roys on 2008-05-19 16:38:46 as ** along with 3 people jfr AbnerCYH jyuh
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to nucleosome gene_regulation gene_expression by roys on 2008-05-19 03:37:09 as ** along with 7 people dchughes aalibes djkt fpattyn vega emptyhb nklee
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