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de tny library [303 articles]

Articles dernièrement stockés dans la bibliothèque de tny .
  • A short history of the thermodynamics of enzyme-catalyzed reactions.
    J Biol Chem, Vol. 279, No. 27. (2 July 2004), pp. 27831-27836.
    by RA Alberty
    posted to thermodynamics review enzyme by tny on 2008-06-25 04:45:37 as ** along with 2 people proportional robert
  • Tryptophan synthase: A multienzyme complex with an intramolecular tunnel
    The Chemical Record, Vol. 1, No. 2. (2001), pp. 140-151.
    by Edith W Miles
    posted to multifunctional_enzyme by tny on 2008-06-23 09:32:59 as **
  • Interdomain interactions in oligomeric enzymes: creation of asymmetry in homo-oligomers and role in metabolite channeling between active centers of hetero-oligomers
    FEBS Letters, Vol. 487, No. 3. (5 January 2001), pp. 327-332.
    by Natalya K Nagradova
    posted to multifunctional_enzyme by tny on 2008-06-23 09:29:17 as **
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to network hierarchy by tny on 2008-05-02 08:09:11 as ** along with 35 people sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor kengg pbull jago Ema gtgt15 hryk nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH briordan deanmalmgren soramame_0518
  • Error bars in experimental biology
    J. Cell Biol., Vol. 177, No. 1. (9 April 2007), pp. 7-11.
    by Geoff Cumming, Fiona Fidler, David L Vaux
    posted to statistics by tny on 2008-02-18 02:33:39 as ** along with 32 people and 5 groups mjoach arindrartow jyuh brian ana batallah manduca kuhn Borelli dayjm kristina chad_davis dullhunk rabu lechristophe nelmor jdelcampo fishtank emmahe lisa1 Daria_G devender bmaust cabbagezs natstreet winterschlaefer krokicki loopback007 wilbur tdmckee renatomilani delenca structural_bioinformatics Bioinformatics VisionLab FlowCytometry Microbial-Ecology
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to network structure by tny on 2008-02-15 03:11:29 as ** along with 17 people and 2 groups carlk saket paolomarcatili bicko lfriedl chad_davis Einat choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl structural_bioinformatics kdl
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to alignment tree_comparison by tny on 2008-02-04 10:32:24 as ** along with 23 people and 2 groups pradiptaray jdelcampo timflutre gracio adacier jyuh bpb aprasad dayjm dpollard djkt cjeans zwang lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • Power laws, Pareto distributions and Zipf's law
    Contemporary Physics, Vol. 46, No. 5. (September 2005), pp. 323-351.
    by Mej Newman
    posted to power_low scale_free by tny on 2008-02-03 10:22:02 as ** along with 7 people and 2 groups mapio itmeson muraken simba06 dbatorski dbilar dberreby dalab_dsi CARTOON
  • STRUCTURE, DYNAMICS, AND CATALYTIC FUNCTION OF DIHYDROFOLATE REDUCTASE
    Annual Review of Biophysics and Biomolecular Structure, Vol. 33, No. 1. (2004), 119.
    by Jason
    posted to catalysis enzyme by tny on 2008-02-01 10:41:54 as **
  • Rhodobacter capsulatus OlsA Is a Bifunctional Enyzme Active in both Ornithine Lipid and Phosphatidic Acid Biosynthesis
    J. Bacteriol., Vol. 189, No. 23. (1 December 2007), pp. 8564-8574.
    by Semra Aygun-Sunar, Rahmi Bilaloglu, Howard Goldfine, Fevzi Daldal
    posted to enzyme multifunctional_enzyme by tny on 2008-02-01 10:39:16 as **
  • Defining functional distances over Gene Ontology
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Angela D Pozo, Florencio Pazos, Alfonso Valencia
    posted to no-tag by tny on 2008-01-30 14:36:09 as ** along with 5 people and 2 groups carlk barry grahamc sobolevnrm barriot Bioinformatics baker-group
  • Understanding the molecular machinery of genetics through 3D structures
    Nature Reviews Genetics
    by JM Thornton, Laskowski
    posted to genetics structure by tny on 2008-01-08 03:45:43 as **
  • Evolutionary history and functional implications of protein domains and their combinations in eukaryotes
    Genome Biology, Vol. 8 (25 June 2007), R121.
    by Masumi Itoh, Jose C Nacher, Kei-Ichi Kuma, Susumu Goto, Minoru Kanehisa
    posted to domain_combination eukaryote evolution by tny on 2007-12-27 04:48:51 as ** along with 2 people cjeans dandaman
  • Genetic variation in the cysteine biosynthesis pathway causes sensitivity to pharmacological compounds
    Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19387-19391.
    by Hyun S Kim, Justin C Fay
    posted to enzyme_function experiment pathway by tny on 2007-12-07 03:50:00 as ** along with 1 person dbensasson
  • Biochemical and Structural Characterization of a Novel Family of Cystathionine [beta]-Synthase Domain Proteins Fused to a Zn Ribbon-Like Domain
    Journal of Molecular Biology, Vol. 375, No. 1. (4 January 2008), pp. 301-315.
    by Michael Proudfoot, Stephen A Sanders, Alex Singer, Rongguang Zhang, Greg Brown, Andrew Binkowski, Linda Xu, Jonathan A Lukin, Alexey G Murzin, Andrzej Joachimiak, Cheryl H Arrowsmith, Aled M Edwards, Alexei V Savchenko, Alexander F Yakunin
    posted to enzyme metal_binding by tny on 2007-12-04 03:36:40 as **
  • Divergence of Cofactor Recognition across Evolution: Coenzyme A Binding in a Prokaryotic Arylamine N-Acetyltransferase
    Journal of Molecular Biology, Vol. 375, No. 1. (4 January 2008), pp. 178-191.
    by Elizabeth Fullam, Isaac M Westwood, Matthew C Anderton, Edward D Lowe, Edith Sim, Martin E Noble
    posted to enzyme enzyme_superfamily evolution by tny on 2007-12-04 03:25:10 as ** along with 1 person dkanter
  • Evolution of binding sites for zinc and calcium ions playing structural roles
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by James W Torrance, Malcolm W Macarthur, Janet M Thornton
    posted to metal_binding by tny on 2007-12-04 03:19:56 as ** along with 2 people jwm grottenolm
  • Increased Catalytic Efficiency following Gene Fusion of Bifunctional Methionine Sulfoxide Reductase Enzymes from Shewanella oneidensis
    Biochemistry (13 November 2007)
    by B Chen, LM Markillie, Y Xiong, MU Mayer, TC Squier
    posted to experiment multifunctional_enzyme by tny on 2007-11-19 05:37:45 as **
  • History of the enzyme nomenclature system
    Bioinformatics, Vol. 16, No. 1. (1 January 2000), pp. 34-40.
    by Keith Tipton, Sinead Boyce
    posted to enzyme review by tny on 2007-10-10 13:32:30 as ** along with 2 people and 1 group jxl robert EC
  • Protein Superfamily Evolution and the Last Universal Common Ancestor (LUCA)
    Journal of Molecular Evolution
    by Juan AG Ranea, Antonio Sillero, Janet M Thornton, Christine A Orengo
    posted to evolution luca protein by tny on 2007-10-09 12:16:42 as ** along with 4 people and 2 groups jwm ana barry grottenolm structural_bioinformatics Bioinformatics
  • Genome-wide analysis of enzyme structure-function combination across three domains of life.
    Protein Pept Lett, Vol. 14, No. 3. (2007), pp. 291-297.
    by Z Zhang, YR Tang
    posted to enzyme_function enzyme_structure scopec by tny on 2007-10-05 13:39:56 as **
  • Domain Architecture of Pyruvate Carboxylase, a Biotin-Dependent Multifunctional Enzyme
    Science, Vol. 317, No. 5841. (24 August 2007), pp. 1076-1079.
    by Martin S Maurice, Laurie Reinhardt, Kathy H Surinya, Paul V Attwood, John C Wallace, Wallace W Cleland, Ivan Rayment
    posted to multifunctional_enzyme structure by tny on 2007-10-05 12:52:02 as ** along with 1 person grottenolm
  • TOPD/FMTS: a new software to compare phylogenetic trees
    Bioinformatics, Vol. 23, No. 12. (15 June 2007), pp. 1556-1558.
    by Pere Puigbo, Santiago Garcia-Vallve, James O Mcinerney
    posted to tree_comparison by tny on 2007-09-25 11:55:18 as **
  • The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case
    BMC Evolutionary Biology, Vol. 7, No. Suppl 2. (2007)
    by Renato Fani, Matteo Brilli, Marco Fondi, Pietro Lio
    posted to enzyme evolution gene_fusion his_metabolism by tny on 2007-09-18 03:52:04 as **
  • Natural history and evolutionary principles of gene duplication in fungi
    Nature, Vol. 449, No. 7158., pp. 54-61.
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to gene_fusion yea by tny on 2007-09-10 07:56:07 as ** along with 11 people and 4 groups pkm aheilbut dpollard dchughes djkt stajich zwang biomcgary lp2 tzhughes maximilianh EisenLab G4ID Genetics-of-Gambling Berkeley Mycology
  • Convergent Evolution of Enzyme Active Sites Is not a Rare Phenomenon
    Journal of Molecular Biology, Vol. 372, No. 3. (21 September 2007), pp. 817-845.
    by Pier F Gherardini, Mark N Wass, Manuela Helmer-Citterich, Michael J Sternberg
    posted to convergent enzyme evolution by tny on 2007-09-04 06:45:08 as ** along with 6 people and 2 groups sim82 barry tjimenez jjray chad_davis Minty structural_bioinformatics Bioinformatics
  • RadCon: phylogenetic tree comparison and consensus
    Bioinformatics, Vol. 16, No. 5. (1 May 2000), pp. 486-487.
    by Joseph L Thorley, Roderic D Page
    posted to evolution tool by tny on 2007-07-04 10:45:34 as ** along with 1 person aprasad
  • The Classification and Origins of Protein Folding Patterns - Annual Review of Biochemistry, 59(1):1007 - First Page Image
    posted to unread by tny on 2007-07-04 09:28:05 as **
  • PROTEIN FOLDS IN THE ALL- AND ALL- CLASSES -
    Annual Review of Biophysics and Biomolecular Structure
    by C Chothia
    posted to unread by tny on 2007-07-02 12:47:45 as **
  • Universal Sharing Patterns in Proteomes and Evolution of Protein Fold Architecture and Life
    Journal of Molecular Evolution, Vol. 60, No. 4. (1 April 2005), pp. 484-498.
    by Gustavo Caetano-Anollés, Derek Caetano-Anollés
    posted to enzyme evolution by tny on 2007-07-02 11:27:38 as **
  • MANET: tracing evolution of protein architecture in metabolic networks
    BMC Bioinformatics, Vol. 7 (19 July 2006), 351.
    by Hee S Kim, Jay E Mittenthal, Gustavo Caetano-Anolles
    posted to database_issue enzyme phylogeny by tny on 2007-07-02 11:17:24 as ** along with 2 people kuhn balajis
  • GENOME TREES AND THE NATURE OF GENOME EVOLUTION
    Annual Review of Microbiology
    posted to evolution tree unread by tny on 2007-07-02 11:15:12 as **
  • Stability for Function Trade-Offs in the Enolase Superfamily "Catalytic Module"
    by Pc Babbit
    posted to enzyme by tny on 2007-06-28 14:37:50 as **
  • The Identification of Similarities between Biological Networks: Application to the Metabolome and Interactome
    Journal of Molecular Biology, Vol. 369, No. 4. (15 June 2007), pp. 1126-1139.
    by Adrian P Cootes, Stephen H Muggleton, Michael J Sternberg
    posted to interactome metabolome network by tny on 2007-05-22 09:55:10 as **
  • Occurrence of multiple, independent gene fusion events for the fifth and sixth enzymes of pyrimidine biosynthesis in different eukaryotic groups
    Gene, Vol. 394, No. 1-2. (1 June 2007), pp. 78-86.
    by Takashi Makiuchi, Takeshi Nara, Takeshi Annoura, Tetsuo Hashimoto, Takashi Aoki
    posted to gene_fusion multifunctional_enzyme by tny on 2007-05-15 10:30:23 as **
  • Construction of the bifunctional enzyme cellulase-β-glucosidase from the hyperthermophilic bacterium Thermotoga maritima
    Biotechnology Letters, Vol. 29, No. 6. (21 June 2007), pp. 931-936.
    by Su-Young Hong, Jin-Suk Lee, Kye-Man Cho, Renukaradhya Math, Yong-Hee Kim, Sun-Joo Hong, Yong-Un Cho, Soo-Jeong Cho, Hoon Kim, Han-Dae Yun
    posted to gene_fusion multifunctional_enzyme by tny on 2007-05-15 10:29:55 as **
  • Mass spectrometry and the search for moonlighting proteins.
    Mass Spectrom Rev, Vol. 24, No. 6. (c 2005), pp. 772-782.
    by CJ Jeffery
    posted to enzyme moonlighting_enzyme by tny on 2007-04-16 03:34:42 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Molecular mechanisms for multitasking: recent crystal structures of moonlighting proteins.
    Curr Opin Struct Biol, Vol. 14, No. 6. (December 2004), pp. 663-668.
    by CJ Jeffery
    posted to enzyme moonlighting_enzyme review structure by tny on 2007-04-16 03:30:45 as ** along with 2 people i41m benlin
  • Aminoacyl-tRNA synthetases database
    Nucl. Acids Res., Vol. 29, No. 1. (1 January 2001), pp. 288-290.
    by Maciej Szymanski, Marzanna A Deniziak, Jan Barciszewski
    posted to aars database_issue trna by tny on 2007-04-14 15:44:35 as **
  • Enzyme recruitment in evolution of new function.
    Annu Rev Microbiol, Vol. 30 (1976), pp. 409-425.
    by RA Jensen
    posted to enzyme_recruitment by tny on 2007-04-12 12:09:51 as **
  • Evolution and tinkering.
    Science, Vol. 196, No. 4295. (10 June 1977), pp. 1161-1166.
    by F Jacob
    posted to evolution by tny on 2007-04-12 12:08:22 as ** along with 2 people shivakumar3_14 treangen
  • Enzyme promiscuity: mechanism and applications
    Trends in Biotechnology, Vol. In Press, Corrected Proof
    by Karl Hult, Per Berglund
    posted to enzyme promiscuity review by tny on 2007-04-12 10:16:43 as ** along with 2 people Jporci msuarezdiez
  • Glutathione transferase-like proteins encoded in genomes of yeasts and fungi: insights into evolution of a multifunctional protein superfamily
    FEMS Microbiology Letters, Vol. 242, No. 1. (1 January 2005), pp. 1-12.
    by Shane Mcgoldrick, Siobhan M O'Sullivan, David Sheehan
    posted to experiment multifunctional_enzyme by tny on 2007-04-10 13:49:17 as **
  • Moonlighting proteins
    Trends in Biochemical Sciences, Vol. 24, No. 1. (1 January 1999), pp. 8-11.
    by Constance J Jeffery
    posted to enzyme moonlight_enzyme multifunctional_enzyme review by tny on 2007-04-10 13:41:18 as ** along with 3 people and 3 groups stevanspringer marcius benlin FAB-lab BioinfoCIPF SGU-CIPF
  • Structural and functional diversity generated by alternative mRNA splicing
    Trends in Biochemical Sciences, Vol. 30, No. 9. (September 2005), pp. 515-521.
    by Jorg Stetefeld, Markus A Ruegg
    posted to alternative_splicing enzyme by tny on 2007-04-02 14:54:20 as ** along with 1 person Jporci
  • Locating the Active Sites of Enzymes Using Mechanical Properties
    posted to catalytic_site enzyme prediction by tny on 2007-04-02 14:51:39 as **
  • Enzymes with Molecular Tunnels
    Acc. Chem. Res., Vol. 36 (2003), pp. 539-548.
    by Frank
    posted to catalysis enzyme molecular_tunnel by tny on 2007-04-02 14:37:43 as **
  • Novel cofactors via post-translational modifications of enzyme active sites
    Chemistry & Biology, Vol. 7, No. 7. (1 July 2000), pp. R159-R171.
    by Nicole M Okeley, Wilfred A van der Donk
    posted to catalysis enzyme post_translational_modification review by tny on 2007-04-02 14:36:06 as **
  • Hydrogen bonds and proton transfer in general-catalytic transition-state stabilization in enzyme catalysis
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1458, No. 1. (12 May 2000), pp. 43-62.
    by KB Schowen, Limbach, GS Denisov, RL Schowen
    posted to catalysis enzyme hydrogen_bond review by tny on 2007-04-02 14:33:18 as **
  • Clustering of domains of functionally related enzymes in the interaction database PRECISE by the generation of primary sequence patterns
    Journal of Molecular Graphics and Modelling, Vol. 24, No. 6. (May 2006), pp. 426-433.
    by Melissa R Landon, Jr Lancia, Karl H Clodfelter, Sandor Vajda
    posted to assignment catalytic_site enzyme by tny on 2007-04-02 14:26:37 as **
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