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de vrich library [152 articles]

Articles dernièrement stockés dans la bibliothèque de vrich .
  • Using HPLC pigment analysis to investigate phytoplankton taxonomy: the importance of knowing your species
    Helgoland Marine Research, Vol. 58, No. 2. (1 April 2004), pp. 77-82.
    by Xabier Irigoien, Bettina Meyer, Roger Harris, Derek Harbour
    posted to pigments by vrich on 2008-05-13 03:30:52 as **
  • Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph
    Proceedings of the National Academy of Sciences, Vol. 104, No. 38. (18 September 2007), pp. 15099-15104.
    by Sky E Rashby, Alex L Sessions, Roger E Summons, Dianne K Newman
    posted to lipids by vrich on 2008-05-12 00:09:08 as **
  • Quantitative comparisons ofin situ microbial biodiversity by signature biomarker analysis
    Journal of Industrial Microbiology and Biotechnology, Vol. 17, No. 3. (1996), pp. 185-196.
    by DC White, JO Stair, DB Ringelberg
    posted to lipids by vrich on 2008-05-12 00:06:02 as **
  • Lipid biomarkers for heterotrophic alteration of suspended particulate organic matter in oxygenated and anoxic water columns of the ocean
    Deep Sea Research Part I: Oceanographic Research Papers, Vol. 42, No. 10. (October 1995), pp. 1749-1771.
    by Stuart G Wakeham
    posted to lipids by vrich on 2008-05-12 00:05:17 as **
  • Linking microbial community composition and soil processes in a California annual grassland and mixed-conifer forest
    Biogeochemistry, Vol. 73, No. 2. (5 April 2005), pp. 395-415.
    by Teri C Balser, Mary K Firestone
    posted to lipids by vrich on 2008-05-12 00:04:35 as **
  • Combined Phospholipid Biomarker-16S rRNA Gene Denaturing Gradient Gel Electrophoresis Analysis of Bacterial Diversity and Physiological Status in an Intertidal Microbial Mat
    Appl. Environ. Microbiol., Vol. 70, No. 11. (1 November 2004), pp. 6920-6926.
    by Laura Villanueva, Antoni Navarrete, Jordi Urmeneta, David C White, Ricardo Guerrero
    posted to lipids by vrich on 2008-05-12 00:02:57 as ** along with 1 person and 1 group jdelcampo Microbial-Ecology
  • Monitoring Diel Variations of Physiological Status and Bacterial Diversity in an Estuarine Microbial Mat: An Integrated Biomarker Analysis.
    Microb Ecol (9 March 2007)
    by Laura Villanueva, Antoni Navarrete, Jordi Urmeneta, Roland Geyer, David C White, Ricardo Guerrero
    posted to lipids by vrich on 2008-05-11 23:51:07 as ** along with 2 people and 1 group jdelcampo rvgomes Microbial-Ecology
  • PLFA Profiling of Microbial Community Structure and Seasonal Shifts in Soils of a Douglas-fir Chronosequence
    Microbial Ecology, Vol. 55, No. 3. (April 2008), pp. 500-511.
    by Moore-Kucera, Jennifer, Dick, Richard
    posted to lipids by vrich on 2008-05-11 23:50:26 as **
  • Analysis of archaeal core ether lipids using Time of FlightSecondary Ion Mass Spectrometry (ToF-SIMS): Exploring a new prospect for the study of biomarkers in geobiology
    Geobiology, Vol. 5, No. 1. (March 2007), pp. 75-83.
    by V Thiel, J Toporski, G Schumann, P Sjovall, J Lausmaa
    posted to lipids by vrich on 2008-05-11 23:43:03 as **
  • Bacterial flora typing with deep, targeted, chip-based Pyrosequencing
    BMC Microbiology, Vol. 7 (30 November 2007), 108.
    by Andreas Sundquist, Saharnaz Bigdeli, Roxana Jalili, Maurice L Druzin, Sarah Waller, Krisin M Pullen, Yasser Y El-Sayed, Mark M Taslimi, Serafim Batzoglou, Mostafa Ronaghi
    posted to 454 16srrna by vrich on 2008-05-11 23:39:56 as **
  • Pyrosequencing enumerates and contrasts soil microbial diversity
    ISME J, Vol. 1, No. 4. (5 July 2007), pp. 283-290.
    by Luiz F Roesch, Roberta R Fulthorpe, Alberto Riva, George Casella, Alison K Hadwin, Angela D Kent, Samira H Daroub, Flavio A Camargo, William G Farmerie, Eric W Triplett
    posted to 454 by vrich on 2008-05-11 23:34:38 as **
  • Short pyrosequencing reads suffice for accurate microbial community analysis
    Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), e120.
    by Zongzhi Liu, Catherine Lozupone, Micah Hamady, Frederic D Bushman, Rob Knight
    posted to 454 by vrich on 2008-05-11 23:30:20 as ** along with 1 person niallhaslam
  • Microbial Response to Heavy Metal-Polluted Soils: Community Analysis from Phospholipid-Linked Fatty Acids and Ester-Linked Fatty Acids Extracts
    J Environ Qual, Vol. 34, No. 5. (8 September 2005), pp. 1789-1800.
    by Belen M Hinojosa, Jose A Carreira, Roberto Garcia-Ruiz, Richard P Dick
    posted to lipids by vrich on 2008-05-11 23:11:07 as **
  • Comparison of Fatty Acid Methyl Ester (FAME) Methods for Characterizing Microbial Communities
    Soil Sci Soc Am J, Vol. 64, No. 5. (1 September 2000), pp. 1659-1668.
    by Mary E Schutter, Richard P Dick
    posted to lipids by vrich on 2008-05-11 23:00:30 as **
  • Metagenomic and small-subunit rRNA analyses of the genetic diversity of bacteria, archaea, fungi, and viruses in soil
    Appl. Environ. Microbiol. (7 September 2007), AEM.00358-07.
    by Noah Fierer, Mya Breitbart, James Nulton, Peter Salamon, Catherine Lozupone, Ryan Jones, Michael Robeson, Robert A Edwards, Ben Felts, Steve Rayhawk, Rob Knight, Forest Rohwer, Robert B Jackson
    posted to community_genomics 454 16srrna by vrich on 2008-05-11 22:42:32 as ** along with 2 people mellabee kerekesj
  • Metagenomics: application of genomics to uncultured microorganisms.
    Microbiol Mol Biol Rev, Vol. 68, No. 4. (December 2004), pp. 669-685.
    by J Handelsman
    posted to community_genomics by vrich on 2008-05-11 22:28:32 as ** along with 2 people mcox knaseanka
  • New approaches to analyzing microbial biodiversity data
    Current Opinion in Microbiology, Vol. 6, No. 3. (June 2003), pp. 282-287.
    by Brendan JM Bohannan, Jennifer Hughes
    posted to stats by vrich on 2008-05-11 22:24:10 as ** along with 1 person jmeppley
  • Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
    Appl. Environ. Microbiol., Vol. 67, No. 10. (1 October 2001), pp. 4399-4406.
    by Jennifer B Hughes, Jessica J Hellmann, Taylor H Ricketts, Brendan J Bohannan
    posted to stats by vrich on 2008-05-11 22:23:51 as ** along with 5 people and 1 group mcox Olaf_Ilzins jmeppley Stenuite andrewirwin Biological oceanography
  • Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes
    Appl. Environ. Microbiol., Vol. 72, No. 3. (1 March 2006), pp. 1719-1728.
    by Peter H Janssen
    posted to clone_libraries 16srrna by vrich on 2008-05-11 22:21:42 as ** along with 1 person mcox
  • Metagenome microarray for screening of fosmid clones containing specific genes
    FEMS Microbiology Letters, Vol. 0, No. 0. (0), pp. ???-???.
    by Soo J Park, Cheol H Kang, Jong C Chae, Sung K Rhee
    posted to microarray fosmid_microarray by vrich on 2008-05-11 22:14:29 as **
  • TOPO TA is A-OK: a test of phylogenetic bias in fungal environmental clone library construction
    Environmental Microbiology, Vol. 9, No. 5. (May 2007), pp. 1329-1334.
    by Taylor, D Lee, Herriott, C Ian, Long, James, O'Neill, Keith
    posted to cloning_bias by vrich on 2008-05-11 21:59:48 as **
  • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    Antonie van Leeuwenhoek, Vol. 73, No. 1. (1 January 1998), pp. 127-141.
    by Gerard Muyzer, Kornelia Smalla
    posted to dgge by vrich on 2008-05-11 19:11:19 as **
  • Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria
    Archives of Microbiology, Vol. 177, No. 2. (1 February 2002), pp. 139-149.
    by Jeanette Norton, Javier Alzerreca, Yuichi Suwa, Martin Klotz
    posted to lh-pcr autotrophs amoa by vrich on 2008-05-11 03:49:43 as **
  • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    Applied and Environmental Microbiology, Vol. 62, No. 2., 625.
    by Suzuki
    posted to pcr_bias pcr 16srrna by vrich on 2008-05-11 02:25:59 as **
  • Kinetic Bias in Estimates of Coastal Picoplankton Community Structure Obtained by Measurements of Small-Subunit rRNA Gene PCR Amplicon Length Heterogeneity
    Appl. Environ. Microbiol., Vol. 64, No. 11. (1 November 1998), pp. 4522-4529.
    by Marcelino Suzuki, Michael S Rappe, Stephen J Giovannoni
    posted to lh-pcr bias by vrich on 2008-05-11 02:06:10 as **
  • Applications of Flow Cytometry to Evolutionary and Population Biology
    Annual Review of Ecology, Evolution, and Systematics, Vol. 38, No. 1. (2007), pp. 847-876.
    by Paul Kron, Jan Suda, Brian C Husband
    posted to fcm by vrich on 2008-05-10 21:36:28 as **
  • Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.
    Nature, Vol. 418, No. 6898. (8 August 2002), pp. 630-633.
    by MS Rappé, SA Connon, KL Vergin, SJ Giovannoni
    posted to sar11 htcc culture by vrich on 2008-05-10 20:06:01 as ** along with 4 people and 1 group knaseanka bjorns madhadron jdelcampo Microbial-Ecology
  • Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria.
    Appl Environ Microbiol, Vol. 70, No. 1. (January 2004), pp. 432-440.
    by JC Cho, SJ Giovannoni
    posted to htcc culture by vrich on 2008-05-10 20:05:33 as ** along with 1 person and 1 group jdelcampo Microbial-Ecology
  • Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom
    Environmental Microbiology, Vol. 8, No. 8. (August 2006), pp. 1361-1370.
    by Morris, , Longnecker, , Giovannoni,
    posted to trflp pirellula om43 fish 16srrna by vrich on 2008-05-10 19:59:20 as **
  • Genome streamlining in a cosmopolitan oceanic bacterium.
    Science, Vol. 309, No. 5738. (19 August 2005), pp. 1242-1245.
    by SJ Giovannoni, HJ Tripp, S Givan, M Podar, KL Vergin, D Baptista, L Bibbs, J Eads, TH Richardson, M Noordewier, MS Rappé, JM Short, JC Carrington, EJ Mathur
    posted to sar11 by vrich on 2008-05-10 19:56:25 as ** along with 2 people knaseanka bjorns
  • The SAR92 Clade: an Abundant Coastal Clade of Culturable Marine Bacteria Possessing Proteorhodopsin
    Appl. Environ. Microbiol., Vol. 73, No. 7. (1 April 2007), pp. 2290-2296.
    by Ulrich Stingl, Russell A Desiderio, Jang-Cheon Cho, Kevin L Vergin, Stephen J Giovannoni
    posted to sar92 pr htcc2207 htcc culture by vrich on 2008-05-10 19:53:32 as **
  • The small genome of an abundant coastal ocean methylotroph.
    Environmental microbiology (3 April 2008)
    by Stephen J J Giovannoni, Darin H H Hayakawa, H James J Tripp, Ulrich Stingl, Scott A A Givan, Jang-Cheon C Cho, Hyun-Myung M Oh, Joshua B B Kitner, Kevin L L Vergin, Michael S S Rappé
    posted to om43 htcc2181 htcc culture by vrich on 2008-05-10 19:44:57 as ** along with 2 people and 2 groups vaulot operon Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.
    Appl Environ Microbiol, Vol. 68, No. 8. (August 2002), pp. 3878-3885.
    by SA Connon, SJ Giovannoni
    posted to htcc culture by vrich on 2008-05-10 19:43:57 as ** along with 1 person and 1 group jdelcampo Microbial-Ecology
  • Dilution-to-Extinction Culturing of Psychrotolerant Planktonic Bacteria from Permanently Ice-covered Lakes in the McMurdo Dry Valleys, Antarctica
    Microbial Ecology, Vol. 55, No. 3. (April 2008), pp. 395-405.
    by Stingl, , Cho, -C, Foo, , Vergin, , Lanoil, , Giovannoni,
    posted to htcc culture by vrich on 2008-05-10 19:36:17 as **
  • Methane-Oxidizing Bacteria in a California Upland Grassland Soil: Diversity and Response to Simulated Global Change
    Appl. Environ. Microbiol., Vol. 71, No. 5. (1 May 2005), pp. 2642-2652.
    by Hans-Peter Horz, Virginia Rich, Sharon Avrahami, Brendan J Bohannan
    posted to trflp stats jasper_ridge global_change amoa by vrich on 2008-05-10 18:10:55 as read
  • PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.
    Appl Environ Microbiol, Vol. 71, No. 12. (December 2005), pp. 8966-8969.
    by SG Acinas, R Sarma-Rupavtarm, V Klepac-Ceraj, MF Polz
    posted to pcr_bias pcr by vrich on 2008-05-10 17:47:30 as ** along with 1 person Olaf_Ilzins
  • Intragenomic Variation and Evolution of the Internal Transcribed Spacer of the rRNA Operon in Bacteria
    Journal of Molecular Evolution, Vol. 65, No. 1. (July 2007), pp. 44-67.
    by Stewart, Frank, Cavanaugh, Colleen
    posted to lh-pcr its genome_evolution arisa 16srrna by vrich on 2008-05-10 17:21:08 as **
  • Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon.
    Proc Natl Acad Sci U S A, Vol. 103, No. 17. (25 April 2006), pp. 6442-6447.
    by AE Ingalls, SR Shah, RL Hansman, LI Aluwihare, GM Santos, ER Druffel, A Pearson
    posted to pacific lipids archaea by vrich on 2008-05-10 01:30:12 as ** along with 1 person and 2 groups kinestetika anammox microbiology_nijmegen
  • Genotypic Diversity Within a Natural Coastal Bacterioplankton Population
    Science, Vol. 307, No. 5713. (25 February 2005), pp. 1311-1313.
    by Janelle R Thompson, Sarah Pacocha, Chanathip Pharino, Vanja Klepac-Ceraj, Dana E Hunt, Jennifer Benoit, Ramahi Sarma-Rupavtarm, Daniel L Distel, Martin F Polz
    posted to vibrios by vrich on 2008-05-09 22:45:41 as **
  • Cell-free cloning using phi29 DNA polymerase.
    Proc Natl Acad Sci U S A, Vol. 102, No. 48. (29 November 2005), pp. 17332-17336.
    by CA Hutchison, HO Smith, C Pfannkoch, JC Venter
    posted to phi29 mda by vrich on 2008-05-09 22:44:25 as ** along with 2 people and 2 groups jyuh dchughes G4ID Genetics-of-Gambling
  • Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru
    Proceedings of the National Academy of Sciences, Vol. 103, No. 10. (7 March 2006), pp. 3846-3851.
    by Jennifer F Biddle, Julius S Lipp, Mark A Lever, Karen G Lloyd, Ketil B Sorensen, Rika Anderson, Helen F Fredricks, Marcus Elvert, Timothy J Kelly, Daniel P Schrag, Mitchell L Sogin, Jean E Brenchley, Andreas Teske, Christopher H House, Kai-Uwe Hinrichs
    posted to lipids fish archaea 16srrna by vrich on 2008-05-09 22:44:01 as **
  • Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 10. (15 May 2007), pp. 3205-3214.
    by Mircea Podar, Carl B Abulencia, Marion Walcher, Don Hutchison, Karsten Zengler, Joseph A Garcia, Trevin Holland, David Cotton, Loren Hauser, Martin Keller
    posted to mda by vrich on 2008-05-09 22:37:04 as ** along with 1 person Olaf_Ilzins
  • Carbon-isotopic analysis of microbial cells sorted by flow cytometry
    Geobiology, Vol. 5, No. 1. (March 2007), pp. 85-95.
    by KM Eek, AL Sessions, DP Lies
    posted to fcm by vrich on 2008-05-09 22:36:13 as **
  • Sequencing genomes from single cells by polymerase cloning
    Nature Biotechnology, Vol. 24, No. 6. (28 May 2006), pp. 680-686.
    by Kun Zhang, Adam C Martiny, Nikos B Reppas, Kerrie W Barry, Joel Malek, Sallie W Chisholm, George M Church
    posted to single_cell_genomics prochlorococcus phi29 by vrich on 2008-05-09 22:07:23 as ** along with 3 people and 2 groups dchughes madhadron johncumbers G4ID Genetics-of-Gambling
  • Optimization of minuscule samples for use with cDNA microarrays.
    J Biochem Biophys Methods (23 December 2007)
    by Susan McLean M Hunter, Fiona C C Mansergh, Martin J J Evans
    posted to rna arrays amplification by vrich on 2008-05-09 21:43:47 as **** along with 1 person jyuh
  • Reliability for detecting composition and changes of microbial communities by T-RFLP genetic profiling
    FEMS Microbiology Ecology, Vol. 63, No. 2. (2008), pp. 249-260.
    by Martin Hartmann, Franco Widmer
    posted to trflp by vrich on 2008-05-09 21:43:20 as **
  • Uncultured archaea in deep marine subsurface sediments: have we caught them all?
    ISME J, Vol. 2, No. 1. (November 2007), pp. 3-18.
    by Andreas Teske, Ketil B Sorensen
    posted to pcr_bias archaea by vrich on 2008-05-09 21:42:02 as ** along with 1 person Olaf_Ilzins
  • A comparative assessment of molecular biological and direct microscopic techniques for assessing aquatic systems
    Environmental Monitoring and Assessment
    by C Knapp, D Findlay, K Kidd, D Graham
    posted to methods_comparison by vrich on 2008-05-09 16:09:59 as **
  • Development of a statistically robust quantification method for microorganisms in mixtures using oligonucleotide microarrays
    Journal of Microbiological Methods, Vol. 70, No. 2. (August 2007), pp. 292-300.
    by Alex E Pozhitkov, Kyle D Bailey, Peter A Noble
    posted to stats arrays by vrich on 2008-05-09 16:08:43 as **
  • Discrimination of Shifts in a Soil Microbial Community Associated with TNT-Contamination Using a Functional ANOVA of 16S rRNA Hybridized to Oligonucleotide Microarrays
    posted to soils anova 16s_arrays by vrich on 2008-05-09 16:05:18 as **
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