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de yas library [446 articles]

Articles dernièrement stockés dans la bibliothèque de yas .
  • A New Method to Measure the Semantic Similarity of GO Terms.
    Bioinformatics (7 March 2007)
    by James Z Z Wang, Zhidian Du, Rapeeporn Payattakool, Philip S S Yu, Chin-Fu F Chen
    posted to semantic-similarity go by yas on 2008-10-14 14:31:38 as ** along with 10 people and 1 group paszkows jyuh jfr grahamc iris_2001 macavity1g florianleitner zwang sgoetz mz2 ParkinsonLab_at_MaRS
  • Exploiting and integrating rich features for biological literature classification.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by H Wang, M Huang, S Ding, X Zhu
    posted to text-classification by yas on 2008-10-14 14:30:36 as ** along with 3 people mariakmejia maralena jyuh
  • Learning to extract relations for protein annotation.
    Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007)
    by JH Kim, A Mitchell, TK Attwood, M Hilario
    posted to information-extraction annotation by yas on 2008-10-14 14:29:54 as **
  • Gene Ontology annotation quality analysis in model eukaryotes.
    Nucleic Acids Res (10 January 2008)
    by Teresia J J Buza, Fiona M M McCarthy, Nan Wang, Susan M M Bridges, Shane C C Burgess
    posted to go annotation by yas on 2008-10-14 14:29:18 as ** along with 3 people jyuh kluck carlk
  • Normalizing biomedical terms by minimizing ambiguity and variability
    BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008)
    by Yoshimasa Tsuruoka, John Mcnaught, Sophia Ananiadou
    posted to term-normalization by yas on 2008-10-14 14:27:17 as ** along with 4 people dullhunk vlachmore satre jyuh
  • Metrics for GO based protein semantic similarity: a systematic evaluation.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by C Pesquita, D Faria, H Bastos, AE Ferreira, AO Falcão, FM Couto
    posted to wsd go by yas on 2008-10-14 14:25:39 as ** along with 2 people mariakmejia jyuh
  • Building a protein name dictionary from full text: a machine learning term extraction approach.
    BMC Bioinformatics, Vol. 6, No. 1. (7 April 2005)
    by L Shi, F Campagne
    posted to dictionary-building by yas on 2008-10-14 14:22:21 as ** along with 4 people and 2 groups irenas bundschu bhaddow gaudan dbk-lab generif_paper
  • Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles.
    J Biomed Inform (7 June 2006)
    by Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W John J Wilbur
    posted to abbreviation-resolution by yas on 2008-10-14 13:22:08 as ** along with 2 people and 1 group helliontroy Gaetan biomedical-nlp
  • New challenges for text mining: mapping between text and manually curated pathways.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by K Oda, JD Kim, T Ohta, D Okanohara, T Matsuzaki, Y Tateisi, J Tsujii
    posted to text-mining by yas on 2008-10-14 13:13:51 as ** along with 3 people mariakmejia maralena satre
  • Information theory applied to the sparse gene ontology annotation network to predict novel gene function
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i529-538.
    by Ying Tao, Lee Sam, Jianrong Li, Carol Friedman, Yves A Lussier
    posted to information-theory go by yas on 2008-10-14 13:08:23 as ** along with 2 people ndiaz jyuh
  • Extraction of semantic biomedical relations from text using conditional random fields
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Markus Bundschus, Mathaeus Dejori, Martin Stetter, Volker Tresp, Hans P Kriegel
    posted to ner information-extraction by yas on 2008-10-14 12:09:21 as ** along with 4 people jyuh bundschu naegele TheresaNiederberger
  • Rule-based human gene normalization in biomedical text with confidence estimation.
    Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, Vol. 6 (2007), pp. 371-379.
    by WW Lau, CA Johnson, KG Becker
    posted to term-normalization ner by yas on 2008-10-14 11:24:56 as **
  • BibGlimpse: The case for a light-weight reprint manager in distributed literature research
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Thomas Tuechler, Golda Velez, Alexandra Graf, David Kreil
    posted to information-retrieval annotation by yas on 2008-10-06 04:49:00 as ** along with 5 people nuin zimbo1 hpiwowar barriot dullhunk
  • Markov model recognition and classification of DNA/protein sequences within large text databases
    Bioinformatics, Vol. 21, No. 21. (1 November 2005), pp. 4046-4053.
    by Jonathan D Wren, William H Hildebrand, Sreedevi Chandrasekaran, Ulrich Melcher
    posted to text-mining genome by yas on 2008-09-29 10:49:40 as ** along with 2 people and 1 group sergut soramame_0518 MiGen Project
  • Text-mining assisted regulatory annotation
    Genome Biology, Vol. 9, No. 2. (2008)
    by Stein Aerts, Maximilian Haeussler, Steven van Vooren, Obi Griffith, Paco Hulpiau, Steven Jones, Stephen Montgomery, Casey Bergman, The
    posted to text-mining annotation by yas on 2008-09-18 14:24:21 as ** along with 8 people dullhunk maximilianh idonaldson mircea jsjoly isimpson bpcusack jyuh
  • Integration of relational and hierarchical network information for protein function prediction
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric Kolaczyk
    posted to network-analysis go by yas on 2008-09-11 04:35:32 as ** along with 5 people mitko grahamc tmmurali barriot dansullivanblk
  • Nominalization and alternations in biomedical language.
    PLoS ONE, Vol. 3, No. 9. (2008)
    by KB Cohen, M Palmer, L Hunter
    posted to text-mining nlp by yas on 2008-09-10 07:42:13 as **
  • Cascading failure and robustness in metabolic networks.
    Proceedings of the National Academy of Sciences of the United States of America (2 September 2008)
    by Ashley G G Smart, Luis A N A Amaral, Julio M M Ottino
    posted to network-analysis bioinformatics by yas on 2008-09-10 03:48:58 as ** along with 1 person marck
  • GENECODIS: A web-based tool for finding significant concurrent annotations in gene lists
    Genome Biology, Vol. 8 (04 January 2007), R3.
    by Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M Carazo, Alberto Pascual-Montano
    posted to annotation software statistics by yas on 2008-08-14 10:04:37 as ** along with 3 people and 1 group aalibes jfr ealloza BioinfoCIPF
  • Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks
    BMC Bioinformatics, Vol. 8 (10 July 2007), 243.
    by Nikolai Daraselia, Anton Yuryev, Sergei Egorov, Ilya Mazo, Iaroslav Ispolatov
    posted to go information-extraction nlp by yas on 2008-08-04 12:33:09 as ** along with 4 people and 1 group jyuh grahamc sgoetz carlk ParkinsonLab_at_MaRS
  • Seeking a New Biology through Text Mining
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 9-13.
    by Andrey Rzhetsky, Michael Seringhaus, Mark Gerstein
    posted to review text-mining by yas on 2008-07-26 03:32:41 as ** along with 8 people jfr icq242500260 pzoot jyuh bootsy fgibson dullhunk tharris
  • OpenDMAP: An open-source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-specific gene expression
    BMC Bioinformatics, Vol. 9 (31 January 2008), 78.
    by Lawrence Hunter, Zhiyong Lu, James Firby, William A Baumgartner, Helen L Johnson, Philip V Ogren, Bretonnel K Cohen
    posted to information-extraction software by yas on 2008-07-25 04:36:10 as ** along with 4 people and 1 group sobolevnrm thomaskelder jyuh satre baker-group
  • SerbGO: searching for the best GO tool.
    Nucleic acids research (14 May 2008)
    by J L L Mosquera, A Sánchez-Pla
    posted to data-interpretation go by yas on 2008-07-07 03:33:13 as ** along with 2 people mariakmejia jyuh
  • Non-linear correlation of content and metadata information extracted from biomedical article datasets.
    Journal of biomedical informatics, Vol. 41, No. 1. (February 2008), pp. 202-216.
    by T Theodosiou, L Angelis, A Vakali
    posted to statistics text-classification by yas on 2008-07-07 03:29:41 as **
  • ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses.
    BMC bioinformatics, Vol. 9 Suppl 6 (2008)
    by TH Stokes, JT Torrance, H Li, MD Wang
    posted to knowledge-sharing microarray wiki by yas on 2008-07-01 03:31:27 as ** along with 5 people jfr lptolik jyuh thomaskelder GeeSharpMinor
  • Semantic Classification of Biomedical Concepts Using Distributional Similarity
    Journal of the American Medical Informatics Association, Vol. 14, No. 4. ( 2007), pp. 467-477.
    by Jung-Wei Fan, Carol Friedman
    posted to classification nlp by yas on 2008-06-26 03:48:34 as ** along with 1 person and 2 groups ejmeij ilps LanguageModeling
  • A critical review of PASBio's argument structures for biomedical verbs
    BMC Bioinformatics, Vol. 7, No. Suppl 3. (2006)
    by Bretonnel K Cohen, Lawrence Hunter
    posted to nlp review by yas on 2008-06-26 03:44:34 as ** along with 1 person satre
  • Gene-set approach for expression pattern analysis
    Brief Bioinform (17 January 2008), bbn001.
    by Dougu Nam, Seon-Young Kim
    posted to gene-expression go review by yas on 2008-06-24 03:45:54 as ** along with 10 people jyuh seemu thomaskelder lp2 giovenko AlexanderPico heliopais tmmurali beete klo
  • Enrichment or depletion of a GO category within a class of genes: which test?
    Bioinformatics (20 December 2006)
    by Isabelle Rivals, Léon Personnaz, Lieng Taing, Marie-Claude C Potier
    posted to go statistics by yas on 2008-06-24 02:43:40 as ** along with 8 people and 2 groups paszkows winterschlaefer jyuh ealloza grahamc capitall zhouyu maralena BioinfoCIPF ParkinsonLab_at_MaRS
  • Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification.
    J Biomed Inform, Vol. 40, No. 3. (June 2007), pp. 316-324.
    by MJ Schuemie, B Mons, M Weeber, JA Kors
    posted to ner by yas on 2008-06-09 08:11:20 as ** along with 1 person Barend
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
    posted to knowledge-sharing text-mining by yas on 2008-06-09 06:16:14 as ** along with 16 people and 1 group jfr AlexanderPico thomaskelder dullhunk tharris renatomilani neils fpattyn sjc Katje jamselem ChrisEvelo carlk jyuh xingxu rholz microbiology_nijmegen
  • Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results
    Journal of Biomedical Discovery and Collaboration, Vol. 3 (15 February 2008), 2.
    by Neil R Smalheiser, Wei Zhou, Vetle I Torvik
    posted to clustering by yas on 2008-05-29 06:22:21 as ** along with 4 people Enro jyuh Gaetan spinaltap526
  • The strength of co-authorship in gene name disambiguation
    BMC Bioinformatics, Vol. 9 (29 January 2008), 69.
    by Richard Farkas
    posted to wsd by yas on 2008-05-29 06:12:27 as ** along with 1 person akastrin
  • MiSearch Adaptive PubMed Search Tool.
    Bioinformatics (6 March 2008)
    by David J J States, Alex S S Ade, Zachary C C Wright, Aaron V V Bookvich, Brian D D Athey
    posted to information-retrieval software by yas on 2008-05-29 06:00:35 as ** along with 3 people jyuh dullhunk Gaetan
  • Synonym set extraction from the biomedical literature by lexical pattern discovery
    BMC Bioinformatics, Vol. 9 (24 March 2008), 159.
    by John Mccrae, Nigel Collier
    posted to text-mining by yas on 2008-05-29 05:57:30 as ** along with 2 people Gaetan graciela
  • PubMed related articles: a probabilistic topic-based model for content similarity
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Jimmy Lin, John W Wilbur
    posted to text-mining by yas on 2008-05-14 10:04:32 as ** along with 6 people jyuh dullhunk msampson Gaetan barriot A_Hoogendam
  • Constructing biological networks through combined literature mining and microarray analysis: a LMMA approach.
    Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2143-2150.
    by S Li, L Wu, Z Zhang
    posted to microarray text-mining by yas on 2008-02-26 09:38:27 as ** along with 1 person jyuh
  • Functional profiling of microarray experiments using text-mining derived bioentities
    Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3098-3099.
    by Pablo Minguez, Fatima Al-Shahrour, David Montaner, Joaquin Dopazo
    posted to microarray text-mining by yas on 2008-02-26 09:35:33 as ** along with 3 people jyuh heliopais dmontaner
  • A language modeling approach to information retrieval
    (1998), pp. 275-281.
    by Jay M Ponte, Bruce B Croft
    posted to information-retrieval by yas on 2008-02-03 15:40:46 as ** along with 8 people and 5 groups A_Olympia deanliao arjen katja ransombriggs dah44 abellogin pprett Philosophy_of_Information Blog_and_Wiki_Research social_navigation ilps ahat
  • Getting Started in Text Mining
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e20.
    by Bretonnel K Cohen, Lawrence Hunter
    posted to review text-mining by yas on 2008-02-01 11:43:33 as ** along with 13 people and 1 group jyuh y4su0 dullhunk hpiwowar sebastien_vigneau shigepong cjeans wchapman sci91078 jfr TheresaNiederberger ulmer quianominorleo dbmi-nlp
  • Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
    Cell, Vol. 131, No. 5. (30 November 2007), pp. 861-872.
    by K Takahashi, K Tanabe, M Ohnuki, M Narita, T Ichisaka, K Tomoda, S Yamanaka
    posted to biomedical by yas on 2008-01-29 16:04:18 as ** along with 6 people and 1 group jyuh stevezhang tmmurali balicea wsjames shayashi Oxford Virology
  • Frontiers of biomedical text mining: current progress
    Brief Bioinform (30 October 2007), bbm045.
    by Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin B Cohen
    posted to text-classification by yas on 2008-01-17 06:31:30 as ** along with 9 people and 2 groups bqchinh cisevol jyuh dullhunk hpiwowar wchapman yggdrasil TheresaNiederberger irenas BergmanLab dbmi-nlp
  • Text processing through Web services: Calling Whatizit
    Bioinformatics (15 November 2007), btm557.
    by Dietrich Rebholz-Schuhmann, Miguel Arregui, Sylvain Gaudan, Harald Kirsch, Antonio J Yepes
    posted to text-mining web-service by yas on 2008-01-15 04:31:36 as ** along with 4 people jyuh dullhunk Gaetan adoms
  • Finding GeneRIFs via gene ontology annotations.
    Pac Symp Biocomput (2006), pp. 52-63.
    by Z Lu, KB Cohen, L Hunter
    posted to summarization by yas on 2008-01-08 22:35:45 as **
  • Semantic retrieval for the accurate identification of relational concepts in massive textbases
    (2006), pp. 1017-1024.
    by Yusuke Miyao, Tomoko Ohta, Katsuya Masuda, Yoshimasa Tsuruoka, Kazuhiro Yoshida, Takashi Ninomiya, Jun'ichi Tsujii
    posted to information-extraction information-retrieval nlp by yas on 2008-01-08 22:32:23 as ** along with 1 person mircea
  • An intelligent search engine and GUI-based efficient MEDLINE search tool based on deep syntactic parsing
    (2006), pp. 17-20.
    by Tomoko Ohta, Yoshimasa Tsuruoka, Jumpei Takeuchi, Jin-Dong Kim, Yusuke Miyao, Akane Yakushiji, Kazuhiro Yoshida, Yuka Tateisi, Takashi Ninomiya, Katsuya Masuda, Tadayoshi Hara, Jun'ichi Tsujii
    posted to nlp web-service by yas on 2008-01-08 22:30:55 as ** along with 1 person mircea
  • Integrating probabilistic extraction models and data mining to discover relations and patterns in text
    (2006), pp. 296-303.
    by Aron Culotta, Andrew Mccallum, Jonathan Betz
    posted to machine-learning text-mining by yas on 2008-01-08 22:05:35 as ** along with 2 people and 2 groups AlisonBabeu dejori ic4 generif_paper
  • Corpus annotation for mining biomedical events from literature
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jin D Kim, Tomoko Ohta, Jun'ichi Tsujii
    posted to corpus by yas on 2008-01-08 19:26:36 as ** along with 11 people and 2 groups jyuh dullhunk bhaddow sobolevnrm gmonce vlachmore wchapman mircea henk-cul gilesc aliekens baker-group dbmi-nlp
  • MILANO - custom annotation of microarray results using automatic literature searches
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Ran Rubinstein, Itamar Simon
    posted to literature-based-annotation microarray by yas on 2008-01-07 09:35:01 as ** along with 1 person and 1 group bundschu generif_paper
  • Identifying gene and protein mentions in text using conditional random fields.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by R McDonald, F Pereira
    posted to ner by yas on 2008-01-07 09:27:56 as ** along with 4 people and 1 group bundschu bhaddow johnkork gmonce generif_paper
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