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de zwang interaction [127 articles]

Recent papers added to de zwang library classified by the tag interaction. You can also see everyone's interaction.
  • Structural Analysis of the Interactions Between Paxillin LD Motifs and α-Parvin
    posted to structure protein motif interaction by zwang on 2008-10-15 12:08:14 as **
  • Structural Analysis of the Interactions Between Paxillin LD Motifs and α-Parvin
    posted to structure motif interaction by zwang on 2008-10-15 09:58:05 as ***
  • Global Analysis of Host-Pathogen Interactions that Regulate Early-Stage HIV-1 Replication
    posted to protein interaction clustering by zwang on 2008-10-15 09:34:10 as ****
  • High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
    Science (21 August 2008), 1158684.
    by Haiyuan Yu, Pascal Braun, Muhammed A Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E Hudson, Juyong Park, Xiaofeng Xin, Michael E Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E Hill, Marc Vidal
    posted to yeast protein network interaction by zwang on 2008-10-15 08:39:36 as **** along with 10 people and 1 group gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy jyuh maralena neils BenosLab
  • Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
    Nucl. Acids Res. (27 June 2008), gkn390.
    by S Pitre, C North, M Alamgir, M Jessulat, A Chan, X Luo, JR Green, M Dumontier, F Dehne, A Golshani
    posted to yeast y2h protein interaction by zwang on 2008-10-07 11:31:21 as **** along with 5 people brianb neils pansapiens renatomilani jyuh
  • Structural biology by NMR: structure, dynamics, and interactions.
    PLoS computational biology, Vol. 4, No. 9. (September 2008)
    by PR Markwick, T Malliavin, M Nilges
    posted to structure protein nmr interaction by zwang on 2008-10-07 11:18:32 as ** along with 3 people and 1 group ruvido laurabailey barry structural_bioinformatics
  • Built-in loops allow versatility in domain–domain interactions: Lessons from self-interacting domains
    Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (2008), pp. 13292-13297.
    by Eyal Akiva, Zohar Itzhaki, Hanah Margalit
    posted to interaction domain by zwang on 2008-09-11 02:51:51 as ** along with 2 people icq242500260 marck
  • Predicting PDZ domain–peptide interactions from primary sequences
    Nature Biotechnology, Vol. 26, No. 9. (17 August 2008), pp. 1041-1045.
    by Jiunn R Chen, Bryan H Chang, John E Allen, Michael A Stiffler, Gavin Macbeath
    posted to protein prediction interaction domain by zwang on 2008-09-10 07:31:56 as **** along with 3 people phoenixzxl jyuh cabbagesofdoom
  • Interactions between branched DNAs and peptide inhibitors of DNA repair
    Nucl. Acids Res., Vol. 36, No. 16. (1 September 2008), pp. 5319-5334.
    by Kevin V Kepple, Namita Patel, Peter Salamon, Anca M Segall
    posted to protein peptide interaction dna by zwang on 2008-09-09 12:50:58 as **
  • Insights into Protein–DNA Interactions through Structure Network Analysis
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000170.
    by R Sathyapriya, MS Vijayabaskar, Saraswathi Vishveshwara
    posted to structure protein interaction dna by zwang on 2008-09-06 04:04:30 as ** along with 7 people and 1 group Zephyrus Ema emptyhb aalibes AbnerCYH Totobox hmk Roswell Cancer Crosstalk
  • Message-Passing Algorithms for the Prediction of Protein Domain Interactions from Protein-Protein Interaction Data
    Bioinformatics (17 July 2008), btn366.
    by Mudassar Iqbal, Alex A Freitas, Colin G Johnson, Massimo Vergassola
    posted to protein interaction domain algorithm by zwang on 2008-09-06 02:54:38 as **** along with 5 people grahamc afon reyez iris_2001 phoenixzxl
  • Impacts of protein-protein interaction domains on organism and network complexity
    Genome Research, Vol. 18, No. 9.
    posted to protein interaction domain by zwang on 2008-09-03 02:11:04 as **
  • A Feature-Based Approach to Modeling Protein–DNA Interactions
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000154.
    by Eilon Sharon, Shai Lubliner, Eran Segal
    posted to dna interaction protein by zwang on 2008-08-30 03:58:06 as ** along with 4 people dakelley Stew emptyhb aalibes
  • Protein ligand interaction database (PLID)
    Computational Biology and Chemistry, Vol. 32, No. 5. (October 2008), pp. 387-390.
    by Srinivas A Reddy, Durga HS Amarnath, Raju S Bapi, Madhavi G Sastry, Narahari G Sastry
    posted to interaction protein by zwang on 2008-08-30 03:52:42 as **
  • InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
    Genome Biology, Vol. 8 (14 September 2007), R192.
    by Haidong Wang, Eran Segal, Asa Ben-Hur, Qianru Li, Marc Vidal, Daphne Koller
    posted to binding interaction prediction protein sites by zwang on 2008-08-22 09:47:16 as **** along with 2 people cjeans carlk
  • The minimum information required for reporting a molecular interaction experiment (MIMIx)
    Nature Biotechnology, Vol. 25, No. 8. (08 August 2007), pp. 894-898.
    by Sandra Orchard, Lukasz Salwinski, Samuel Kerrien, Luisa Montecchi-Palazzi, Matthias Oesterheld, Volker Stümpflen, Arnaud Ceol, Andrew Chatr-Aryamontri, John Armstrong, Peter Woollard, John J Salama, Susan Moore, Jérôme Wojcik, Gary D Bader, Marc Vidal, Michael E Cusick, Mark Gerstein, Anne-Claude Gavin, Giulio Superti-Furga, Jack Greenblatt, Joel Bader, Peter Uetz, Mike Tyers, Pierre Legrain, Stan Fields, Nicola Mulder, Michael Gilson, Michael Niepmann, Lyle Burgoon, Javier, Carlos Prieto, Victoria M Perreau, Chris Hogue, Hans-Werner Mewes, Rolf Apweiler, Ioannis Xenarios, David Eisenberg, Gianni Cesareni, Henning Hermjakob
    posted to complex interaction protein by zwang on 2008-08-15 10:08:39 as **** along with 6 people and 1 group jyuh hpiwowar yeastyboy grahamc jandot softsimu ParkinsonLab_at_MaRS
  • A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis
    Cell, Vol. 134, No. 3. (8 August 2008), pp. 534-545.
    by Mike Boxem, Zoltan Maliga, Niels Klitgord, Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P Roth, Lilia M Iakoucheva, Keith A Dunker, Richard Bonneau, Kristin C Gunsalus, David E Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A Hyman, Marc Vidal
    posted to domain interaction network protein y2h yeast by zwang on 2008-08-13 02:17:01 as **** along with 3 people cerca grahamc phoenixzxl
  • Impacts of protein-protein interaction domains on organism and network complexityPPI domains and organism/network complexity
    posted to domain interaction network protein by zwang on 2008-08-11 04:15:42 as **
  • An integrative approach for predicting interactions of protein regions
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i35-41.
    by Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht
    posted to domain interaction prediction protein by zwang on 2008-08-11 04:13:26 as **** along with 2 people neils kluck
  • Detection of heteromerization of more than two proteins by sequential BRET-FRET.
    Nature methods (29 June 2008)
    by Paulina Carriba, Gemma Navarro, Francisco Ciruela, Sergi Ferré, Vicent Casadó, Luigi Agnati, Antoni Cortés, Josefa Mallol, Kjell Fuxe, Enric I I Canela, Carmen Lluís, Rafael Franco
    posted to bret fluorescent fret interaction protein by zwang on 2008-08-11 03:59:34 as *** along with 1 person jyuh
  • Functional coherence in domain interaction networks
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i28-34.
    by Jayesh Pandey, Mehmet Koyuturk, Shankar Subramaniam, Ananth Grama
    posted to domain interaction network by zwang on 2008-08-11 03:58:01 as ** along with 1 person phoenixzxl
  • Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size
    Mol Syst Biol, Vol. 4 (2008)
    by Jingshan Zhang, Sergei Maslov, Eugene I Shakhnovich
    posted to expression interaction protein by zwang on 2008-08-07 02:49:43 as ** along with 3 people grahamc Ema biehl
  • Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking.
    Proceedings of the National Academy of Sciences of the United States of America (29 May 2008)
    by Hocine Madaoui, Raphaël Guerois
    posted to co-evolution interaction interface prediction structure by zwang on 2008-08-06 07:42:22 as *** along with 3 people cabbagesofdoom phoenixzxl bicko
  • Predicting and Validating Protein Interactions Using Network Structure
    PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000118.
    by Pao-Yang Chen, Charlotte M Deane, Gesine Reinert
    posted to interaction network prediction protein structure by zwang on 2008-07-30 03:51:04 as **** along with 4 people icq242500260 phoenixzxl roys mingzhi
  • The structural basis for an essential subunit interaction in influenza virus RNA polymerase
    posted to complex influenza interaction structure by zwang on 2008-07-30 03:44:26 as **
  • Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements
    BMC Bioinformatics, Vol. 9 (23 July 2008), 320.
    by Qingwu Yang, Sing-Hoi Sze
    posted to folding interaction prediction protein structure by zwang on 2008-07-26 10:43:26 as *
  • From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions
    Mol Syst Biol, Vol. 4 (15 July 2008)
    by Igor Ulitsky, Tomer Shlomi, Martin Kupiec, Ron Shamir
    posted to genetic interaction module by zwang on 2008-07-22 06:55:53 as ** along with 2 people roys ptrobajo
  • A Dominant Conformational Role for Amino Acid Diversity in Minimalist Protein-Protein Interfaces
    Journal of Molecular Biology, Vol. 381, No. 2. (29 August 2008), pp. 407-418.
    by Ryan N Gilbreth, Kaori Esaki, Akiko Koide, Sachdev S Sidhu, Shohei Koide
    posted to interaction interface protein structure by zwang on 2008-07-18 04:02:00 as ** along with 2 people mapplab phoenixzxl
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to interaction network protein review structure by zwang on 2008-07-16 04:11:11 as **** along with 8 people and 1 group chad_davis Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl structural_bioinformatics
  • Protein-Protein Interactions in the Membrane: Sequence, Structural, and Biological Motifs
    Structure, Vol. 16, No. 7. (9 July 2008), pp. 991-1001.
    by David T Moore, Bryan W Berger, William F Degrado
    posted to interaction protein structure by zwang on 2008-07-14 02:46:16 as ** along with 1 person neils
  • Dissecting direct reprogramming through integrative genomic analysis
    Nature (28 May 2008)
    by Tarjei S Mikkelsen, Jacob Hanna, Xiaolan Zhang, Manching Ku, Marius Wernig, Patrick Schorderet, Bradley E Bernstein, Rudolf Jaenisch, Eric S Lander, Alexander Meissner
    posted to genome-wide interaction by zwang on 2008-07-09 03:18:08 as ** along with 3 people jasonflannick djkt inesdesantiago
  • Structural and Functional Studies of Nup107/Nup133 Interaction and Its Implications for the Architecture of the Nuclear Pore Complex
    Molecular Cell, Vol. 30, No. 6. (20 June 2008), pp. 721-731.
    by Thomas Boehmer, Sandra Jeudy, Ian C Berke, Thomas U Schwartz
    posted to complex interaction structure by zwang on 2008-07-07 04:18:01 as **
  • Evolutionary plasticity of genetic interaction networks
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391.
    by Julia Tischler, Ben Lehner, Andrew G Fraser
    posted to evolution interaction network by zwang on 2008-07-02 07:47:48 as ** along with 4 people and 1 group caseybrown smgomez ptrobajo emptyhb GomezLab
  • Kinetic barriers and the role of topology in Protein and RNA folding.
    Protein Sci (23 May 2008), ps.036319.108.
    by Tobin R Sosnick
    posted to folding interaction protein rna by zwang on 2008-07-01 08:50:56 as *** along with 1 person ARobson
  • Structural specificity in coiled-coil interactions
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Gevorg Grigoryan, Amy E Keating
    posted to coil interaction structure by zwang on 2008-06-27 03:58:27 as ** along with 3 people phoenixzxl marck viktor21614
  • An in Vivo Map of the Yeast Protein Interactome
    Science, Vol. 320, No. 5882. (13 June 2008), pp. 1465-1470.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to genome interaction protein yeast by zwang on 2008-06-27 03:58:03 as ** along with 4 people thomaskelder Petersarkies renatomilani balicea
  • Ensemble Non-negative Matrix Factorization Methods for Clustering Protein-Protein Interactions
    Bioinformatics (12 June 2008), btn286.
    by Derek Greene, Gerard Cagney, Nevan Krogan, Padraig Cunningham
    posted to clustering interaction protein by zwang on 2008-06-27 03:43:26 as ** along with 2 people chad_davis grahamc
  • Using support vector machine combined with auto covariance to predict protein-protein interactions from protein sequences
    Nucl. Acids Res. (4 April 2008), gkn159.
    by Yanzhi Guo, Lezheng Yu, Zhining Wen, Menglong Li
    posted to interaction prediction protein svm by zwang on 2008-06-16 03:51:12 as **** along with 4 people jyuh marck phoenixzxl tmmurali
  • Predicting novel RNA-RNA interactions.
    Current opinion in structural biology (14 May 2008)
    by Irmtraud M M Meyer
    posted to interaction prediction rna structure by zwang on 2008-06-16 03:49:12 as ***** along with 1 person marck
  • A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Arun K Ramani, Zhihua Li, Traver G Hart, Mark W Carlson, Daniel R Boutz, Edward M Marcotte
    posted to interaction ortholog protein rna by zwang on 2008-06-13 12:18:37 as ** along with 9 people and 1 group druvus jeremymiller tmmurali biomcgary phoenixzxl giovanni grahamc ardalby ptrobajo OPIG
  • A Bayesian Estimator of Protein-Protein Association Probabilities
    Bioinformatics (22 May 2008), btn238.
    by JM Gilmore, DL Auberry, JL Sharp, AM White, KK Anderson, DS Daly
    posted to bayesian interaction prediction protein by zwang on 2008-06-03 04:01:29 as ** along with 2 people jyuh renatomilani
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to genome-wide human interaction by zwang on 2008-05-16 02:19:46 as ** along with 20 people and 1 group tharris chrissp100 sanchezbuelna jyuh phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez bpcusack C. elegans / WormBase
  • An optimized split-ubiquitin cDNA-library screening system to identify novel interactors of the human Frizzled 1 receptor
    Nucl. Acids Res., Vol. 36, No. 6. (1 April 2008), e37.
    by Dietmar Dirnberger, Monika Messerschmid, Ralf Baumeister
    posted to genome-wide human interaction by zwang on 2008-05-14 12:10:35 as **
  • Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 333-340.
    by SD Dunn, LM Wahl, GB Gloor
    posted to contact interaction mi phylogeny prediction residue by zwang on 2008-05-09 02:44:06 as *** along with 3 people and 1 group bicko sobolevnrm marck baker-group
  • Bimolecular Fluorescence Complementation (BiFC) Analysis as a Probe of Protein Interactions in Living Cells
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 465-487.
    by Tom K Kerppola
    posted to bifc interaction protein by zwang on 2008-05-08 09:58:32 as ** along with 1 person jyuh
  • Large-scale screening for novel low-affinity extracellular protein interactions
    Genome Res. (22 February 2008), gr.7187808.
    by Mark K Bushell, Christian Sollner, Benjamin Schuster-Boeckler, Alex Bateman, Gavin J Wright
    posted to interaction protein by zwang on 2008-04-15 05:06:59 as ** along with 9 people tmmurali neils Dualsystems grahamc jyuh carlk niallhaslam kluck paolomarcatili
  • Predicting Human Interactive Learning by Regret-Driven Neural Networks
    Science, Vol. 319, No. 5866. (22 February 2008), pp. 1111-1113.
    by Davide Marchiori, Massimo Warglien
    posted to interaction network neural prediction by zwang on 2008-04-12 13:33:57 as **** along with 5 people and 1 group mdimmic brian Koh shigepong shivakmr VisionLab
  • Genome-wide mapping of allele-specific protein-DNA interactions in human cells
    Nature Methods, Vol. 5, No. 4. (16 March 2008), pp. 307-309.
    by Nathaniel D Maynard, Jing Chen, Rhona K Stuart, Jian-Bing Fan, Bing Ren
    posted to dna genome-wide interaction protein by zwang on 2008-04-02 07:26:10 as ** along with 3 people eskay jyuh inesdesantiago
  • PLoS Computational Biology: A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli
    posted to eukaryota interaction transcription by zwang on 2008-03-30 06:33:45 as **
  • The role of disorder in interaction networks: a structural analysis
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Philip M Kim, Andrea Sboner, Yu Xia, Mark Gerstein
    posted to interaction network structure by zwang on 2008-03-27 05:09:26 as ** along with 5 people bootsy biomcgary maralena phoenixzxl chad_davis
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